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JAL-2810 auto search checkbox state stored as user preference. Enabled by default.
2017-05-26
Jim Procter
JAL-2418 JAL-2549 JABAWS 2.2 release notes
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2017-05-26
Jim Procter
Merge branch 'features/JAL-2549_updateJABAWSto220'...
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2017-05-25
Jim Procter
Merge branch 'develop' into features/JAL-1648_cache_user_inputs
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2017-05-23
Jim Procter
JAL-2549 RNAAliFold result to annotation file roundtrip...
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2017-05-23
Jim Procter
JAL-2549 skip ‘Unrecognised Service’ which resolves...
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2017-05-23
Jim Procter
JAL-2549 replace JABAWS 2.1 with 2.2 client and remove...
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2017-05-22
Jim Procter
JAL-2418 patch build - broken htsjdk import
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2017-05-18
Jim Procter
Merge branch 'bug/JAL-2388_typeCheckAlignView.getUpdatedView...
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2017-05-18
Jim Procter
JAL-2388 return empty hidden columns for fully visible...
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2017-05-18
Jim Procter
JAL-2418 remove explicit test suite stats
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2017-05-17
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_release2102
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2017-05-17
Jim Procter
Merge branch 'bug/JAL-2510amendFeatures' into develop
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2017-05-17
Jim Procter
JAL-2447 add links to issues.jalview.org for experimental...
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2017-05-17
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-17
Jim Procter
JAL-2447 experimental section in ‘Whats New’
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2017-05-17
Jim Procter
JAL-2447 JAL-2295 JAL-2296 documenting as experimental...
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2017-05-17
Jim Procter
Merge branch 'develop' into documentation/JAL-2418_release2102
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2017-05-17
Jim Procter
Merge branch 'features/JAL-2447experimentalFlag' into...
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2017-05-17
Jim Procter
JAL-2418 release notes
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2017-05-16
Jim Procter
Merge branch 'documentation/JAL-2418_release2102' into...
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2017-05-16
Jim Procter
JAL-2418 release notes
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2017-05-16
Jim Procter
JAL-384 documentation on custom colours groovy examples
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2017-05-16
Jim Procter
JAL-384 - groovy scripts for conserved/unconserved...
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2017-05-16
Jim Procter
JAL-2418 release notes
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2017-05-16
Jim Procter
JAL-2418 JAL-2316 added to new features
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2017-05-16
Jim Procter
JAL-2316 tweaking docs and links in help
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2017-05-16
Jim Procter
JAL-2418 release 2.10.2 release notes template
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2017-05-16
Jim Procter
alternative patch for JAL-2339 readability in java...
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2017-05-16
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
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2017-05-15
Jim Procter
JAL-2507 fix test: knockon from capitalisation on secondary...
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2017-05-15
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
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2017-05-15
Jim Procter
JAL-2311 disable and relocate Jared service tests to...
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2017-05-15
Jim Procter
JAL-2507 capitalisation for annotation lines generated...
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2017-05-15
Jim Procter
JAL-2507 case insensitive recognition of annotation...
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2017-05-15
Jim Procter
JAL-2507 - required callers to specify exact ignore...
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2017-05-15
Jim Procter
JAL-2535 quick hack to implement posterior probabilities...
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2017-05-15
Jim Procter
Merge branch 'features/JAL-2376_add-horizontal-bar...
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2017-05-15
Jim Procter
JAL-2371 create a default ResidueShader when constructing...
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2017-05-12
Jim Procter
Merge branch 'features/JAL-2435splitScreenFont' into...
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2017-05-12
Jim Procter
JAL-2418 broken help ref
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2017-05-12
Jim Procter
JAL-2435 documentation and what’s new
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2017-05-12
Jim Procter
JAL-2435 mention new checkbox in linked cDNA/Protein...
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2017-05-12
Jim Procter
JAL-2435 mirror antiAlias setting between cDNA and...
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2017-05-12
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
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2017-05-12
Jim Procter
JAL-2388 mention overview popup in documentation
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2017-05-12
Jim Procter
JAL-2388 checkbox in overview popup for applet
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2017-05-12
Jim Procter
Merge branch 'features/JAL-2228_efficient_featurecounts...
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2017-05-12
Jim Procter
JAL-2228 updated script in help docs, renamed docs...
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2017-05-11
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholm' into...
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2017-05-11
Jim Procter
JAL-2509 JAL-2507 allow whitespace in GS annotation...
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2017-05-11
Jim Procter
JAL-2507 JAL-2509 allow whitespace==null for annotation...
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2017-05-11
Jim Procter
JAL-2507 test if an annotation is ‘whitespace’
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2017-05-11
Jim Procter
JAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitespace...
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2017-05-09
Jim Procter
JAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS...
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2017-05-09
Jim Procter
JAL-2509 verify stockholm parser’s bracket regex is...
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2017-05-09
Jim Procter
JAL-2509 extend set of brackets recognised by stockholm...
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2017-05-09
Jim Procter
JAL-2507 JAL-2509 extend test to cover round trip of...
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2017-05-09
Jim Procter
JAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS...
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2017-05-09
Jim Procter
JAL-2507 output secondary structure regardless of presence...
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2017-05-09
Jim Procter
JAL-2507 simplify round trip test via AppletFormatAdapter
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2017-05-09
Jim Procter
JAL-2507 test for alignment+rna annotation -> Stockholm...
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2017-05-04
Jim Procter
Merge branch 'develop' into features/JAL-2228_efficient_feat...
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2017-05-04
Jim Procter
Merge branch 'bug/JAL-2507_rnasecstrstockholmoutput...
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2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeannotati...
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2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
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2017-05-04
Jim Procter
JAL-1656 make RNAML->Stockholm round trip test pass...
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2017-05-04
Jim Procter
JAL-2507 JAL-2509 allow differences in visibility of...
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2017-05-04
Jim Procter
JAL-2507 JAL-2509 new assert to compare secondary structure...
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2017-05-04
Jim Procter
fix for JAL-2509 - don’t replace all bracket types...
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2017-05-04
Jim Procter
fix for JAL-2507 - resolve stockholm per residue annotation...
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2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeannotati...
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2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
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2017-05-03
Jim Procter
JAL-2393 JAL-2416 refresh the score model menu when...
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2017-05-03
Jim Procter
JAL-2503 show threshold slider for quantitative annotation...
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2017-05-03
Jim Procter
JAL-2503 AlignmentAnnotation.isQuantitative() test
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2017-05-03
Jim Procter
Merge branch 'features/JAL-2432_annotbypercent' into...
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2017-05-03
Jim Procter
JAL-1933 JAL-2501 i18n for all auto calculated descriptions
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2017-05-03
Jim Procter
JAL-1933 show occupancy in tooltip for row
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2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering values...
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2017-05-03
Jim Procter
JAL-2432 applet: only enable percent checkbox when...
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2017-05-03
Jim Procter
JAL-2432 percentage checkbox follows threshold value...
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2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
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2017-05-03
Jim Procter
JAL-2432 simplify code
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2017-05-02
Jim Procter
JAL-1632 validate CalculationChooser when selection...
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2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
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2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
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2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
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2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
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2017-05-02
Jim Procter
JAL-2424 fixme’s removed
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2017-05-02
Jim Procter
JAL-2424 update assert to correct width for normalising...
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2017-05-02
Jim Procter
JAL-2424 resolved, assert updated to pass (1f != 1d)
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2017-05-02
Jim Procter
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 patch jalview/io/testProps.jvprops to show...
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2017-04-27
Jim Procter
JAL-1933 patch jalview/io/testProps.jvprops to show...
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 don't show occupancy row when testing conservation...
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 applet doc for showOccupancy parameter
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