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2006-08-11	amwaterhouse	Desktop is null if -noDisplay is set	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Make a new FeatureRenderer	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	AlignPanel.repaint	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	Printstacktrace	commit \| commitdiff \| tree
2006-08-11	amwaterhouse	inFile might be null if PDB was pasted	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Smoother drawing	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Check selection size before making tree	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	group.getSize should be ab.alignment.getGroups	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Check alAndColSel are not null	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Control and shift for col selection	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Reset button added	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Right mouse works with cursor mode	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Only add 1 feature settings table	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Comment out start and end refs	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	file: is a URL	commit \| commitdiff \| tree
2006-08-10	amwaterhouse	Invert column selection	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Must save all the feature settings	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Check if groups have already been added or not	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Fix for local sources with no capabilities	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Icon drawing updated	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Null hidden cols check	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	No need to re repaint	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Height and info message	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Transparency	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Endres check for wrap alignment	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Set the start res and start seq	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Copy hidden cols to new alignment	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Make sure link menu is displayed	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	Save links and scores and keyValues for features	commit \| commitdiff \| tree
2006-08-09	amwaterhouse	KeyValue pairs for features	commit \| commitdiff \| tree
2006-08-08	amwaterhouse	Input Data...	commit \| commitdiff \| tree
2006-08-08	amwaterhouse	Capitals	commit \| commitdiff \| tree
2006-08-08	amwaterhouse	Out by 1 error on show columns	commit \| commitdiff \| tree
2006-08-08	amwaterhouse	Applet has hidden regions	commit \| commitdiff \| tree
2006-08-07	amwaterhouse	Use idCanvas highlight system	commit \| commitdiff \| tree
2006-08-07	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-08-07	amwaterhouse	Use idCanvas highlight system	commit \| commitdiff \| tree
2006-08-07	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-08-07	amwaterhouse	Set wrapped mode even if false	commit \| commitdiff \| tree
2006-08-07	amwaterhouse	catch out of memory error for consensus when loading...	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Show reveal all menu	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	findSeq in SeqPanel is used	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Resize image if id width changes	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	No need for count	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Resize inactive when mouse exited and no dragEvent	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	getIndex replaced with findSeq in seqPanel	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Remove system.out	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Scrolling fixed and selection in wrapped mode updated	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	getIndex replaced by findSeq in Seqpanel	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Out by one error on reveal columns	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Check height of featurePanel, not this for mousepresses	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Applet doesnt have hidden columns	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Dont set all feature descriptions on status bar	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Dont draw all the panel if just a mouse movement	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	If colour hasnt been created, make a new one	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	Add transparency	commit \| commitdiff \| tree
2006-07-28	amwaterhouse	output source in gff file	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Send gapChar to print original Data	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Remove immediate call to repaint when deleting	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	seq size cant be less than 2 for tree	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Sends gapChar to seqData	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	remove unnecessary constructor	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Remove unnecessary imports	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Reset das_registry_url if null or empty	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Dont set pdb file if it doenst exist	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	NOR the <pre> tabs	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Use DBRefSource.PDB	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Save PDB file to disk	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Readline instead of bit by bit	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Cant have col less than 0	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Save ref to pdb file	commit \| commitdiff \| tree
2006-07-27	amwaterhouse	Readded	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	PDB file MUST have an id	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	not used	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Load and save PDB files	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Add file ref for pdb files	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Switch to new srs url	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	seqs[j] replaces current	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	moved to org.biojava	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	back to org.biojava	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Back to org.biojava	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Column hide/show updated	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Calculate overlap hidden regions	commit \| commitdiff \| tree
2006-07-26	amwaterhouse	Remove left, right, empty cols work on hidden reps	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	ColumnSelection moved to datamodel	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	activeRow is -1	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Odd edit bug with represented seqs fixed	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Dont add pdb format here	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Moved to datamodel	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Output menus added	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Repaint	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Dont make new image unless resize	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Reorder popupmenu	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Renamed files not to conflict with BIOJAVA	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	jalview.biojava	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	x < endres-startres	commit \| commitdiff \| tree
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