Add file ref for pdb files

diff --git a/src/jalview/schemabinding/version2/Pdbentry.java b/src/jalview/schemabinding/version2/Pdbentry.java
index 15694db..93c2748 100755 (executable)
--- a/src/jalview/schemabinding/version2/Pdbentry.java
+++ b/src/jalview/schemabinding/version2/Pdbentry.java
@@ -46,6 +46,11 @@ public class Pdbentry implements java.io.Serializable {
     private java.lang.String _type;\r
 \r
     /**\r
+     * Field _file\r
+     */\r
+    private java.lang.String _file;\r
+\r
+    /**\r
      * Field _items\r
      */\r
     private java.util.Vector _items;\r
@@ -105,6 +110,17 @@ public class Pdbentry implements java.io.Serializable {
     } //-- java.util.Enumeration enumeratePdbentryItem() \r
 \r
     /**\r
+     * Returns the value of field 'file'.\r
+     * \r
+     * @return String\r
+     * @return the value of field 'file'.\r
+     */\r
+    public java.lang.String getFile()\r
+    {\r
+        return this._file;\r
+    } //-- java.lang.String getFile() \r
+\r
+    /**\r
      * Returns the value of field 'id'.\r
      * \r
      * @return String\r
@@ -245,6 +261,16 @@ public class Pdbentry implements java.io.Serializable {
     } //-- jalview.schemabinding.version2.PdbentryItem removePdbentryItem(int) \r
 \r
     /**\r
+     * Sets the value of field 'file'.\r
+     * \r
+     * @param file the value of field 'file'.\r
+     */\r
+    public void setFile(java.lang.String file)\r
+    {\r
+        this._file = file;\r
+    } //-- void setFile(java.lang.String) \r
+\r
+    /**\r
      * Sets the value of field 'id'.\r
      * \r
      * @param id the value of field 'id'.\r

diff --git a/src/jalview/schemabinding/version2/PdbentryDescriptor.java b/src/jalview/schemabinding/version2/PdbentryDescriptor.java
index bb64034..61a9eda 100755 (executable)
--- a/src/jalview/schemabinding/version2/PdbentryDescriptor.java
+++ b/src/jalview/schemabinding/version2/PdbentryDescriptor.java
@@ -135,6 +135,42 @@ public class PdbentryDescriptor extends org.exolab.castor.xml.util.XMLClassDescr
             fieldValidator.setValidator(typeValidator);\r
         }\r
         desc.setValidator(fieldValidator);\r
+        //-- _file\r
+        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_file", "file", org.exolab.castor.xml.NodeType.Attribute);\r
+        desc.setImmutable(true);\r
+        handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
+            public java.lang.Object getValue( java.lang.Object object ) \r
+                throws IllegalStateException\r
+            {\r
+                Pdbentry target = (Pdbentry) object;\r
+                return target.getFile();\r
+            }\r
+            public void setValue( java.lang.Object object, java.lang.Object value) \r
+                throws IllegalStateException, IllegalArgumentException\r
+            {\r
+                try {\r
+                    Pdbentry target = (Pdbentry) object;\r
+                    target.setFile( (java.lang.String) value);\r
+                }\r
+                catch (java.lang.Exception ex) {\r
+                    throw new IllegalStateException(ex.toString());\r
+                }\r
+            }\r
+            public java.lang.Object newInstance( java.lang.Object parent ) {\r
+                return null;\r
+            }\r
+        } );\r
+        desc.setHandler(handler);\r
+        addFieldDescriptor(desc);\r
+        \r
+        //-- validation code for: _file\r
+        fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+        { //-- local scope\r
+            StringValidator typeValidator = new StringValidator();\r
+            typeValidator.setWhiteSpace("preserve");\r
+            fieldValidator.setValidator(typeValidator);\r
+        }\r
+        desc.setValidator(fieldValidator);\r
         //-- initialize element descriptors\r
         \r
         //-- _items\r