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2016-03-30	tcofoegbu	JAL-1668 further clean-up of popup menu and NPE check...	commit \| commitdiff \| tree
2016-03-30	tcofoegbu	JAL-2038 bug fix for NPE while setting progress message...	commit \| commitdiff \| tree
2016-03-28	tcofoegbu	merge	commit \| commitdiff \| tree
2016-03-28	tcofoegbu	JAL-1919 Fixed broken test in DBRefUtilsTest	commit \| commitdiff \| tree
2016-03-28	tcofoegbu	JAL-1668 removed redundant UI elements in PopupMenu...	commit \| commitdiff \| tree
2016-03-25	tcofoegbu	JAL-2035 improvement to bind Jalview to Chimera model...	commit \| commitdiff \| tree
2016-03-24	tcofoegbu	JAL-1919 Settings to disable duplicate generation of...	commit \| commitdiff \| tree
2016-03-24	tcofoegbu	JAL-1479 Commented out debug sysout's for SiftsClient	commit \| commitdiff \| tree
2016-03-24	tcofoegbu	JAL-1919 Added ability to generate temprature factor...	commit \| commitdiff \| tree
2016-03-24	tcofoegbu	merge	commit \| commitdiff \| tree
2016-03-24	tcofoegbu	fixed applet build	commit \| commitdiff \| tree
2016-03-24	tcofoegbu	JAL-1919 set DEFUALT_STRUCTURE_FORMAT to PDB	commit \| commitdiff \| tree
2016-03-23	tcofoegbu	merge	commit \| commitdiff \| tree
2016-03-23	tcofoegbu	JAL-2009 added programmatic custom feature setting...	commit \| commitdiff \| tree
2016-03-22	tcofoegbu	resolve conflict with Mungo's merge	commit \| commitdiff \| tree
2016-03-22	tcofoegbu	JAL-1919 code improvement to make PDB sequence fetcher...	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	JAL-1919 refactor moved StructureViewerSettings	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	merged features/JAL-1919_mmCIF-Support to develop	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	JAL-2028 added improvement for preconfigured ordering...	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	mungo merge	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-03-21	tcofoegbu	JAL-1667 Changed PDBSearchPanel's search result layout...	commit \| commitdiff \| tree
2016-03-16	tcofoegbu	JAL-2028 improvment to the displayed column customisation	commit \| commitdiff \| tree
2016-03-15	tcofoegbu	JAL-1919 refined structure view annotation settings...	commit \| commitdiff \| tree
2016-03-11	tcofoegbu	JAL-1478 Fixed ArrayIndexOutOfBoundsException while...	commit \| commitdiff \| tree
2016-03-11	tcofoegbu	merge	commit \| commitdiff \| tree
2016-03-11	tcofoegbu	JAL-2026 Bug fix for best quality filter	commit \| commitdiff \| tree
2016-03-11	tcofoegbu	JAL-1818 reimplemented sequence and annotation processing...	commit \| commitdiff \| tree
2016-03-10	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-03-10	tcofoegbu	JAL-2025 added code to stanitise query for structure...	commit \| commitdiff \| tree
2016-03-10	tcofoegbu	JAL-2024 code to enforce case insensitivity for manual...	commit \| commitdiff \| tree
2016-03-03	tcofoegbu	JAL-1919 fixed bug causing PDBfile test failure	commit \| commitdiff \| tree
2016-03-03	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-03-03	tcofoegbu	JAL-1919 updated unicode mapping symbol	commit \| commitdiff \| tree
2016-03-03	tcofoegbu	JAL-1919 updated unicode symbol for mapping	commit \| commitdiff \| tree
2016-03-03	tcofoegbu	JAL-1919 PDBfile and JmolParser refactor	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	JAL-2009 reverted 'RES NUM' feature back to 'RESNUM'	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	JAL-1994 updated implementation for broken tests	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	JAL-1994 fix for broken tests	commit \| commitdiff \| tree
2016-02-25	tcofoegbu	JAL-1919 initial support for mmCIF using JMol API....	commit \| commitdiff \| tree
2016-02-23	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-02-23	tcofoegbu	JAL-1720 renamed Structure Chooser filters according...	commit \| commitdiff \| tree
2016-02-22	tcofoegbu	JAL-1720 JAL-2002 improvement for 'uniprot coverage...	commit \| commitdiff \| tree
2016-02-22	tcofoegbu	JAL-1944 bugfix for error when exporting hidden sequences...	commit \| commitdiff \| tree
2016-02-19	tcofoegbu	JAL-2009 Codes to enable storing inserted residues...	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	merge develop	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1976 catch and handle OOM Error	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1976 Added progress indicators for HTML_SVG and...	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1957 deleted stale comment	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	merge	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1957 enabled multi-chain mapping and highlight...	commit \| commitdiff \| tree
2016-01-29	tcofoegbu	merge from develop	commit \| commitdiff \| tree
2016-01-29	tcofoegbu	JAL-1979 refactor out duplicated similar block of code...	commit \| commitdiff \| tree
2016-01-27	tcofoegbu	JAL-1479 fixed off-by-one error in SIFTS mapping output...	commit \| commitdiff \| tree
2016-01-26	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-01-26	tcofoegbu	JAL-1999 JAL-1479 implemented configurable fail-safe...	commit \| commitdiff \| tree
2016-01-25	tcofoegbu	JAL-1998 bugfix for division by zero error for PDB...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1479 JAL-1979 bugfix to check entire annotation...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1479 JAL-1979 updated the modified-aminoacid triplet...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1986 JAL-1996 separated out appletDeploment page...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1994 bugfix in build.xml to prevent proguard from...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1919 basic support for importing and viewing mmCIF...	commit \| commitdiff \| tree
2016-01-11	tcofoegbu	JAL-1990 added a progress indicator for Structure Chooser...	commit \| commitdiff \| tree
2016-01-11	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-11	tcofoegbu	JAL-1991 bug fix for some flat-file printers to check...	commit \| commitdiff \| tree
2016-01-07	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-07	tcofoegbu	JAL-1479 implemented timestamp based caching of SIFTS...	commit \| commitdiff \| tree
2015-11-25	tcofoegbu	JAL-1479 refactored DBRef fetching code to StructureChooser...	commit \| commitdiff \| tree
2015-11-25	tcofoegbu	JAL-1479 applet build debug	commit \| commitdiff \| tree
2015-11-25	tcofoegbu	JAL-1479 bugfix after decoupling SIFTS preference settings	commit \| commitdiff \| tree
2015-11-23	tcofoegbu	JAL-1479 commented out DBRef fetching code from SIFTS...	commit \| commitdiff \| tree
2015-11-17	tcofoegbu	JAL-1479 Refactored Sifts configuration preference...	commit \| commitdiff \| tree
2015-11-16	tcofoegbu	JAL-1967 JAL-1479 refactored sequence<->structure mapping...	commit \| commitdiff \| tree
2015-11-13	tcofoegbu	JAL-1479 added transfer of residue annotation for SIFTS...	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	JAL-1479 JAL-1957 Added code to enable simultaneous...	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	merge of SIFTs Branch	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	merge	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	JAL-1957 JAL-1479 Further optimisation of SIFTs Client...	commit \| commitdiff \| tree
2015-11-10	tcofoegbu	JAL 1960 added code to restrict structure chooser to...	commit \| commitdiff \| tree
2015-11-05	tcofoegbu	JAL-1479 SiftClient house keeping	commit \| commitdiff \| tree
2015-11-05	tcofoegbu	JAL-1942 JAL-1479 refactored SequenceI.getDBRef/SequenceI...	commit \| commitdiff \| tree
2015-11-02	tcofoegbu	JAL-1955 Uniprot sequence fetcher refactor	commit \| commitdiff \| tree
2015-10-29	tcofoegbu	JAL-1926 JAL-1479 updated PDBfile fetcher to add sourceDBRef...	commit \| commitdiff \| tree
2015-10-28	tcofoegbu	JAL-1479 added support for SIFTs mapping output viewing...	commit \| commitdiff \| tree
2015-10-28	tcofoegbu	JAL-1952 bugfix	commit \| commitdiff \| tree
2015-10-28	tcofoegbu	JAL-1887 JAL-1479 bugfix for incorrect start/end for...	commit \| commitdiff \| tree
2015-10-22	tcofoegbu	JAL-1479 added basic support for SIFTs mapping - more...	commit \| commitdiff \| tree
2015-10-22	tcofoegbu	JAL-1479 implemented preferences for SIFTs / Needleman...	commit \| commitdiff \| tree
2015-10-22	tcofoegbu	JAL-1942 JAL-1479 DBRefFetcher refactor	commit \| commitdiff \| tree
2015-10-15	tcofoegbu	JAL-1479 refactored SequenceI interface - changed getDBRef...	commit \| commitdiff \| tree
2015-10-14	tcofoegbu	JAL-1926 created interface for DBRefEntry	commit \| commitdiff \| tree
2015-10-14	tcofoegbu	JAL-1926 added supporting model changes to enable saving...	commit \| commitdiff \| tree
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