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2016-03-03	tcofoegbu	JAL-1919 updated unicode symbol for mapping	commit \| commitdiff \| tree
2016-03-03	tcofoegbu	JAL-1919 PDBfile and JmolParser refactor	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	JAL-2009 reverted 'RES NUM' feature back to 'RESNUM'	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	JAL-1994 updated implementation for broken tests	commit \| commitdiff \| tree
2016-02-26	tcofoegbu	JAL-1994 fix for broken tests	commit \| commitdiff \| tree
2016-02-25	tcofoegbu	JAL-1919 initial support for mmCIF using JMol API....	commit \| commitdiff \| tree
2016-02-23	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-02-23	tcofoegbu	JAL-1720 renamed Structure Chooser filters according...	commit \| commitdiff \| tree
2016-02-22	tcofoegbu	JAL-1720 JAL-2002 improvement for 'uniprot coverage...	commit \| commitdiff \| tree
2016-02-22	tcofoegbu	JAL-1944 bugfix for error when exporting hidden sequences...	commit \| commitdiff \| tree
2016-02-19	tcofoegbu	JAL-2009 Codes to enable storing inserted residues...	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	merge develop	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1976 catch and handle OOM Error	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1976 Added progress indicators for HTML_SVG and...	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1975 updated image export pipeline to produce more...	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1957 deleted stale comment	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	merge	commit \| commitdiff \| tree
2016-02-09	tcofoegbu	JAL-1957 enabled multi-chain mapping and highlight...	commit \| commitdiff \| tree
2016-01-29	tcofoegbu	merge from develop	commit \| commitdiff \| tree
2016-01-29	tcofoegbu	JAL-1979 refactor out duplicated similar block of code...	commit \| commitdiff \| tree
2016-01-27	tcofoegbu	JAL-1479 fixed off-by-one error in SIFTS mapping output...	commit \| commitdiff \| tree
2016-01-26	tcofoegbu	develop merge	commit \| commitdiff \| tree
2016-01-26	tcofoegbu	JAL-1999 JAL-1479 implemented configurable fail-safe...	commit \| commitdiff \| tree
2016-01-25	tcofoegbu	JAL-1998 bugfix for division by zero error for PDB...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1479 JAL-1979 bugfix to check entire annotation...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1479 JAL-1979 updated the modified-aminoacid triplet...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1986 JAL-1996 separated out appletDeploment page...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1994 bugfix in build.xml to prevent proguard from...	commit \| commitdiff \| tree
2016-01-21	tcofoegbu	JAL-1919 basic support for importing and viewing mmCIF...	commit \| commitdiff \| tree
2016-01-11	tcofoegbu	JAL-1990 added a progress indicator for Structure Chooser...	commit \| commitdiff \| tree
2016-01-11	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-11	tcofoegbu	JAL-1991 bug fix for some flat-file printers to check...	commit \| commitdiff \| tree
2016-01-07	tcofoegbu	merge	commit \| commitdiff \| tree
2016-01-07	tcofoegbu	JAL-1479 implemented timestamp based caching of SIFTS...	commit \| commitdiff \| tree
2015-11-25	tcofoegbu	JAL-1479 refactored DBRef fetching code to StructureChooser...	commit \| commitdiff \| tree
2015-11-25	tcofoegbu	JAL-1479 applet build debug	commit \| commitdiff \| tree
2015-11-25	tcofoegbu	JAL-1479 bugfix after decoupling SIFTS preference settings	commit \| commitdiff \| tree
2015-11-23	tcofoegbu	JAL-1479 commented out DBRef fetching code from SIFTS...	commit \| commitdiff \| tree
2015-11-17	tcofoegbu	JAL-1479 Refactored Sifts configuration preference...	commit \| commitdiff \| tree
2015-11-16	tcofoegbu	JAL-1967 JAL-1479 refactored sequence<->structure mapping...	commit \| commitdiff \| tree
2015-11-13	tcofoegbu	JAL-1479 added transfer of residue annotation for SIFTS...	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	JAL-1479 JAL-1957 Added code to enable simultaneous...	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	merge of SIFTs Branch	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	merge	commit \| commitdiff \| tree
2015-11-11	tcofoegbu	JAL-1957 JAL-1479 Further optimisation of SIFTs Client...	commit \| commitdiff \| tree
2015-11-10	tcofoegbu	JAL 1960 added code to restrict structure chooser to...	commit \| commitdiff \| tree
2015-11-05	tcofoegbu	JAL-1479 SiftClient house keeping	commit \| commitdiff \| tree
2015-11-05	tcofoegbu	JAL-1942 JAL-1479 refactored SequenceI.getDBRef/SequenceI...	commit \| commitdiff \| tree
2015-11-02	tcofoegbu	JAL-1955 Uniprot sequence fetcher refactor	commit \| commitdiff \| tree
2015-10-29	tcofoegbu	JAL-1926 JAL-1479 updated PDBfile fetcher to add sourceDBRef...	commit \| commitdiff \| tree
2015-10-28	tcofoegbu	JAL-1479 added support for SIFTs mapping output viewing...	commit \| commitdiff \| tree
2015-10-28	tcofoegbu	JAL-1952 bugfix	commit \| commitdiff \| tree
2015-10-28	tcofoegbu	JAL-1887 JAL-1479 bugfix for incorrect start/end for...	commit \| commitdiff \| tree
2015-10-22	tcofoegbu	JAL-1479 added basic support for SIFTs mapping - more...	commit \| commitdiff \| tree
2015-10-22	tcofoegbu	JAL-1479 implemented preferences for SIFTs / Needleman...	commit \| commitdiff \| tree
2015-10-22	tcofoegbu	JAL-1942 JAL-1479 DBRefFetcher refactor	commit \| commitdiff \| tree
2015-10-15	tcofoegbu	JAL-1479 refactored SequenceI interface - changed getDBRef...	commit \| commitdiff \| tree
2015-10-14	tcofoegbu	JAL-1926 created interface for DBRefEntry	commit \| commitdiff \| tree
2015-10-14	tcofoegbu	JAL-1926 added supporting model changes to enable saving...	commit \| commitdiff \| tree
2015-10-13	tcofoegbu	JAL-1479 added SIFTS XSD and generated JAXB bindings...	commit \| commitdiff \| tree
2015-10-08	tcofoegbu	JAL-1912 JAL-1896 release notes updated	commit \| commitdiff \| tree
2015-10-08	tcofoegbu	JAL-1912 JAL-1896 release notes updated	commit \| commitdiff \| tree
2015-10-08	tcofoegbu	merge	commit \| commitdiff \| tree
2015-10-07	tcofoegbu	JAL-1912 added documentation	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	JAL-1912 house keeping	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	JAL-1912 added null check for SequenceMapping variable...	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	merge	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	JAL-1908 bugfix	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	merge	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	JAL-1726 updated test error msg	commit \| commitdiff \| tree
2015-10-05	tcofoegbu	JAL-1912 updated AnnotationDisplaySettingPojo	commit \| commitdiff \| tree
2015-10-01	tcofoegbu	JAL-1912 Double.NaN breaks JSON serialization - added...	commit \| commitdiff \| tree
2015-10-01	tcofoegbu	JAL-1912 refactor annotation refsequence assignemnt...	commit \| commitdiff \| tree
2015-09-30	tcofoegbu	house keeping	commit \| commitdiff \| tree
2015-09-30	tcofoegbu	JAL-1860 house keeping	commit \| commitdiff \| tree
2015-09-30	tcofoegbu	JAL-1852 made disabling querying of unpublished PDB...	commit \| commitdiff \| tree
2015-09-30	tcofoegbu	JAL-1912 added support of tcoffee annotation and other...	commit \| commitdiff \| tree
2015-09-30	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-30	tcofoegbu	JAL-1852 disable querying of unpublished PDB entries...	commit \| commitdiff \| tree
2015-09-29	tcofoegbu	JAL-1896 fixed NPE for RNA Helice without equivalent...	commit \| commitdiff \| tree
2015-09-28	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-28	tcofoegbu	JAL-1896 revised implementation to construct a ColourSchemeI...	commit \| commitdiff \| tree
2015-09-25	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-25	tcofoegbu	JAL-1907 bugfix for NPE while parsing a features file	commit \| commitdiff \| tree
2015-09-25	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-25	tcofoegbu	JAL-1860 disabled default enter behaviour on pdb search...	commit \| commitdiff \| tree
2015-09-24	tcofoegbu	JAL-1860 only allow enter key when valid selection...	commit \| commitdiff \| tree
2015-09-24	tcofoegbu	JAL-1860 keyboard operation of pdb sequence fetcher...	commit \| commitdiff \| tree
2015-09-24	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-24	tcofoegbu	JAL-1896 bugfix to enabled Jalview restore clustal...	commit \| commitdiff \| tree
2015-09-22	tcofoegbu	JAL-1774 house keeping	commit \| commitdiff \| tree
2015-09-21	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-21	tcofoegbu	JAL-1774 modifed warning dialog to use JVDialog rather...	commit \| commitdiff \| tree
2015-09-18	tcofoegbu	JAL-1774 JAL-1506 revised implementaion for clear highlighte...	commit \| commitdiff \| tree
2015-09-18	tcofoegbu	merge	commit \| commitdiff \| tree
2015-09-18	tcofoegbu	JAL-1506 revised implementation to clear only selected...	commit \| commitdiff \| tree
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