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JAL-2629 selected HMM name now shown in HMMER menu
2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
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2017-05-04
Jim Procter
JAL-1656 make RNAML->Stockholm round trip test pass...
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2017-05-04
Jim Procter
JAL-2507 JAL-2509 allow differences in visibility of...
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2017-05-04
Jim Procter
JAL-2507 JAL-2509 new assert to compare secondary structure...
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2017-05-04
Jim Procter
fix for JAL-2509 - don’t replace all bracket types...
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2017-05-04
Jim Procter
fix for JAL-2507 - resolve stockholm per residue annotation...
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2017-05-04
Jim Procter
Merge branch 'features/JAL-2503_filteronquantitativeannotati...
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2017-05-04
Jim Procter
Merge branch 'features/JAL-2393customMatrices' into...
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2017-05-03
Jim Procter
JAL-2393 JAL-2416 refresh the score model menu when...
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2017-05-03
Jim Procter
JAL-2503 show threshold slider for quantitative annotation...
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2017-05-03
Jim Procter
JAL-2503 AlignmentAnnotation.isQuantitative() test
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2017-05-03
Jim Procter
Merge branch 'features/JAL-2432_annotbypercent' into...
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2017-05-03
Jim Procter
JAL-1933 JAL-2501 i18n for all auto calculated descriptions
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2017-05-03
Jim Procter
JAL-1933 show occupancy in tooltip for row
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2017-05-03
Jim Procter
JAL-2432 honour percentage checkbox when entering values...
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2017-05-03
Jim Procter
JAL-2432 applet: only enable percent checkbox when...
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2017-05-03
Jim Procter
JAL-2432 percentage checkbox follows threshold value...
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2017-05-03
Jim Procter
JAL-2432 recover state for ‘display percentage’ checkbox
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2017-05-03
Jim Procter
JAL-2432 simplify code
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2017-05-02
Jim Procter
JAL-1632 validate CalculationChooser when selection...
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2017-05-02
Jim Procter
JAL-1632 enable/disable CalculationChooser buttons...
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2017-05-02
Jim Procter
JAL-1632 compare size of input against minimums for...
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2017-05-02
Jim Procter
JAL-1632 OK->Calculate, Cancel->Close buttons
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2017-05-02
Jim Procter
JAL-1632 removed ‘tree’ option and changed dialog layout
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2017-05-02
Jim Procter
JAL-2424 fixme’s removed
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2017-05-02
Jim Procter
JAL-2424 update assert to correct width for normalising...
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2017-05-02
Jim Procter
JAL-2424 resolved, assert updated to pass (1f != 1d)
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2017-05-02
Jim Procter
Merge branch 'develop' into features/JAL-2393customMatrices
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2017-05-02
Jim Procter
Merge branch 'bug/JAL-2424getVisibleContigs' into develop
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 patch jalview/io/testProps.jvprops to show...
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2017-04-27
Jim Procter
JAL-1933 patch jalview/io/testProps.jvprops to show...
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 don't show occupancy row when testing conservation...
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 applet doc for showOccupancy parameter
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2017-04-27
Jim Procter
JAL-1933 desktop documentation for show occupancy preference
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2017-04-27
Jim Procter
JAL-1933 use constant for preference token
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-1933 consensus calculation doesn’t depend on occupancy...
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2017-04-27
Jim Procter
JAL-1933 desktop preferences for occupancy
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2017-04-27
Jim Procter
JAL-1933 action and label for occupancy
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2017-04-27
Jim Procter
JAL-1933 test for SHOW_OCCUPANCY .jalview_properties...
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2017-04-27
Jim Procter
JAL-1933 showOccupancy applet parameter and SHOW_OCCUPANCY...
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2017-04-27
Jim Procter
JAL-1933 only create and add occupancy row to alignment...
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2017-04-27
Jim Procter
JAL-2494 fix: updated behaviour for SequenceGroup.findAnnota...
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2017-04-27
Jim Procter
JAL-2494 fixed behaviour for null parameters in line...
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2017-04-27
Jim Procter
JAL-2494 javadoc for AnnotatedCollectionI.findAnnotations
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2017-04-27
Jim Procter
JAL-2494 test to cover AnnotatedCollectionI.findAnnotations
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2017-04-27
Jim Procter
Merge branch 'features/JAL-1933_occupancy' into develop
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2017-04-27
Jim Procter
JAL-2432 desktop: filter/select columns by threshold...
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2017-04-27
Jim Procter
JAL-1933 JAL-2432 code tidy
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2017-04-27
Jim Procter
JAL-2432 left justify value shown after adjusting threshold...
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2017-04-27
Jim Procter
JAL-1933 JAL-2432 percentile filter for select/hide...
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2017-04-27
Jim Procter
JAL-1933 shade occupancy from light grey to black for...
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2017-04-27
Jim Procter
JAL-1933 don’t show symbol counts under histogram ...
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2017-04-27
Jim Procter
JAL-1933 occupancy row has a space below it for counts
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2017-04-27
Jim Procter
Merge branch 'develop' into features/JAL-1933_occupancy
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2017-03-24
Jim Procter
JAL-2360 fix applet build by separating castor XML...
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2017-03-21
Jim Procter
Merge branch 'features/JAL-2388OverviewWindow' into...
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2017-03-20
Jim Procter
Merge branch 'bug/JAL-2421overviewboxflicker' into...
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2017-03-16
Jim Procter
Merge branch 'merges/develop_JAL2295setChimeraAttributes...
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2017-03-16
Jim Procter
JAL-1933 refactor parameter for code clarity
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2017-03-06
Jim Procter
Merge branch 'merges/develop_JAL2295setChimeraAttributes...
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2017-02-20
Jim Procter
Merge branch 'features/JAL-2379pcaMemory' into develop
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2017-02-16
Jim Procter
Merge branch 'bug/JAL-2374_JAL-2419_overlappinggroups_curren...
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2017-02-15
Jim Procter
JAL-2374 JAL-2419 - TODO suspiciously redundant nested...
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2017-02-15
Jim Procter
fix for JAL-2419 - don’t trash the current selection
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2017-02-15
Jim Procter
JAL-2374 don’t search twice for containing group to...
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2017-02-15
Jim Procter
JAL-2374 tests for SequenceGroup.contains
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2017-02-15
Jim Procter
JAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functional’
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2017-02-15
Jim Procter
JAL-2374 new contains methods for seq and seq,apos
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2017-02-15
Jim Procter
JAL-2374 javadoc - qualify that sequence argument to...
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2017-02-09
Jim Procter
Merge branch 'features/JAL-2316' into develop
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2017-02-09
Jim Procter
Merge branch 'develop' into features/JAL-2316
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2017-02-08
Jim Procter
JAL-2316 tidying preferences help page
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2017-02-08
Jim Procter
JAL-2316 tidied up documentation for Links tab
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2017-02-08
Jim Procter
JAL-2366 updated default URL to www.jalview.org/services...
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2017-02-07
Jim Procter
Merge branch 'features/JAL-2371collectionColourScheme...
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2016-12-16
Jim Procter
JAL-2360 report line number when threshold cannot be...
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2016-12-14
Jim Procter
Merge branch 'patch/JAL-2197_jpredforjnets' into develop
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2016-12-04
Jim Procter
JAL-1933 show occupancy count as a tooltip
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2016-12-04
Jim Procter
JAL-1933 switch from gap count to occupancy
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2016-12-01
Jim Procter
JAL-1933 update the bounds for the Gap annotation row...
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2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annotation...
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2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
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2016-11-29
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-29
Jim Procter
JAL-2325 update release date in whatsNew
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2016-11-29
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-11-29
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-28
Jim Procter
JAL-2325 JAL-1878 update minimum versions of JRE for...
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2016-11-28
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-28
Jim Procter
JAL-2325 finalise release notes
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2016-11-25
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-25
Jim Procter
JAL-2325 JAL-2273 update vms bound to different installers
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2016-11-25
Jim Procter
JAL-2325 more ignores on sourcedist build
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2016-11-24
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-24
Jim Procter
JAL-2325 exclude .class and .* files (install anywhere...
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2016-11-24
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-24
Jim Procter
JAL-2325 applied BSD license for chimera/StrucViz2...
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