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Merge branch 'releases/Release_2_11_3_Branch' into develop
2023-09-26
James Procter
JAL-3858 JAL-4090 avoid NPE when given out of bound...
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2023-09-25
James Procter
JAL-3858 JAL-4090 PAE documentation..
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2023-09-25
James Procter
JAL-3858 minimum value for a range is used to shade...
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2023-09-25
James Procter
JAL-3858 javadoc and slightly revised green linear...
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2023-09-25
James Procter
JAL-3858 report PAE range with sensible precision
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2023-09-25
James Procter
JAL-4090 fix link...
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2023-09-22
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-09-22
James Procter
fix link...
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2023-09-22
James Procter
JAL-4090 smaller associate PDB file panel image in...
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2023-09-21
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-09-21
James Procter
JAL-4090 what’s new and additional help docs for JAL...
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2023-09-21
James Procter
JAL-4090 JAL-4262 JAL-4265 release notes
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2023-09-21
James Procter
JAL-1551 javadoc for mapUtils
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2023-09-21
James Procter
JAL-3855 disable the AlphaFold DB entry in Sequence...
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2023-09-21
James Procter
JAL-3858 JAL-3855 documentation for import and display...
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2023-09-21
James Procter
Merge branch 'merge/JAL-4262+JAL-4265+JAL-4269+JAL...
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2023-09-20
James Procter
JAL-4285 don’t say you are reporting warnings/errors...
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2023-09-20
James Procter
JAL-4265 JAL-4286 reinstated explicit restoreSession...
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2023-09-20
James Procter
JAL-4265 JAL-4267 added a ‘restoreSession’ StructureViewer...
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2023-09-20
James Procter
JAL-4195 JAL-1069 JAL-4160 errors in Cache should go...
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2023-09-20
James Procter
Merge branch 'reviews/merge/JAL-4262+JAL-4265+JAL-4269...
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2023-09-20
James Procter
JAL-4217 - try to invokeAndWait on Desktop.closeAll...
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2023-09-20
James Procter
JAL-4274 fix test failure message typo
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2023-09-20
James Procter
JAL-4265 bail early when attempting to export a view...
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2023-09-20
James Procter
JAL-4265 JAL-4267 allow injection of custom commands...
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2023-09-20
James Procter
JAL-4265 back out redundant ‘saveState’ and ‘restoreState...
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2023-09-08
James Procter
JAL-4281 store/restore ID width and manual adjustment...
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2023-09-08
James Procter
JAL-4281 reinstate access to legacy id width calculation...
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2023-09-08
James Procter
JAL-4282 make sure font is updated in alignPanel before...
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2023-09-07
James Procter
JAL-4090 release notes for JAL-244 JAL-901 JAL-4260...
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2023-09-07
James Procter
JAL-4279 suppress error dialogs raised by file loader...
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2023-09-07
James Procter
JAL-4279 move on if the file doesn't exist, or Identify...
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2023-09-07
James Procter
JAL-4279 catch exceptions with fileLoader and report...
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2023-09-07
James Procter
JAL-4090 JAL-4160 JAL-4274 image export dimensions...
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2023-09-07
James Procter
JAL-4273 release notes for visible adjuster marks,...
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2023-09-07
James Procter
JAL-4090 report JAL-4261 known issue
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2023-09-06
James Procter
JAL-4260 attempt to rejig paging when id width is adjusted...
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2023-09-06
James Procter
JAL-4258 remove unnecessary ‘this’
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2023-09-06
James Procter
JAL-4259 construct a new SequenceRenderer when rendering...
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2023-09-06
James Procter
JAL-629 javadoc on new setMapping variant for structureselec...
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2023-09-06
James Procter
JAL-629 reinstate INFO level stack trace from StructureChoos...
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2023-09-06
James Procter
JAL-629 javadoc
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2023-09-05
James Procter
JAL-629 remove structure viewer from the list of structure...
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2023-09-05
James Procter
JAL-629 use JalviewStructureDisplayI in place of StructureVi...
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2023-09-04
James Procter
JAL-3088 check for validEnd when working out whether...
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2023-09-04
James Procter
JAL-4250 fix location and height for RNA secondary...
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2023-09-04
James Procter
JAL-4250 rendition is way too obscure for me
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2023-09-01
James Procter
JAL-4124 need to repaint alignFrames imported from...
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2023-09-01
James Procter
JAL-4124 matrix is saved in dataset, with forward references...
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2023-09-01
James Procter
JAL-4124 add strategic newlines in matrix stringified...
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2023-08-31
James Procter
JAL-4124 comment out incomplete test bits.. for now
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2023-08-31
James Procter
JAL-4124 MappableContactMatrix equivalence and hashCode...
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2023-08-29
James Procter
JAL-4124 Dataset holds list of MatrixType instances...
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2023-08-29
James Procter
JAL-4124 decouple mappable contact matrix mapping logic...
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2023-08-28
James Procter
Merge branch 'develop' into more_efficient_PAE
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2023-08-28
James Procter
JAL-4090 JAL-4250 JAL-4253 JAL-325 release notes and...
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2023-08-28
James Procter
Merge branch 'improvement/JAL-4250_secondary_structure_annot...
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2023-08-28
James Procter
JAL-4253 drop the bottom line so it lines up with the...
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2023-08-21
James Procter
JAL-4062 a few more tests to check append honours distinct...
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2023-08-21
James Procter
JAL-4062 revert to ArrayList and integrate check for...
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2023-08-21
James Procter
JAL-4062 fix up imports
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2023-08-21
James Procter
JAL-4062 appendResult(seq,start,end) called by structureSele...
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2023-08-17
James Procter
JAL-4090 JAL-4243 bio.tools json file release notes
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2023-07-23
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-23
James Procter
JAL-4090 JAL-4243 bio.tools json file release notes
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2023-07-22
James Procter
JAL-4243 Jalview 2.11.2.7’s biotool record as JSON...
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2023-07-20
James Procter
JAL-3855 tree title for PAE matrix tree is PAE Matrix...
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2023-07-20
James Procter
JAL-3855 auto select clusters and fix up colouring...
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2023-07-19
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-19
James Procter
Merge branch 'patch/JAL-3855_fixup_pae' into develop
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2023-07-18
James Procter
Merge branch 'develop' into patch/JAL-3855_fixup_pae
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2023-07-18
James Procter
JAL-4153 comments re patch incorrectly committed under...
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2023-07-18
James Procter
exploring making PAE storage in projects more efficient
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2023-07-18
James Procter
JAL-3855 PAE matrices are transposed on import from...
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2023-07-18
James Procter
JAL-3855 JAL-4124 test checks asymmetric matrices are...
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2023-07-18
James Procter
JAL-3858 fix off-by-one in matrix visualisation and...
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2023-07-18
James Procter
JAL-3858 flip diagonal so matrix visualisation is top...
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2023-07-18
James Procter
JAL-3858 annotation .height is bigger than graphHeight...
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2023-07-18
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-17
James Procter
JAL-4119 TRACE level console message reporting download...
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2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
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2023-07-17
James Procter
JAL-4090 JAL-4165 known issue
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2023-07-17
James Procter
JAL-4223 add testdata for test
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2023-07-17
James Procter
JAL-4090 mark JAL-4178 and JAL-4142 as known issues
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2023-07-17
James Procter
JAL-4217 move Commands.structureImageTest to testTask1
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2023-07-12
James Procter
JAL-4223 - test and patch to ensure numbering matches...
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2023-07-11
James Procter
Merge branch 'develop' into releases/Release_2_11_3_Branch
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2023-07-10
James Procter
Merge branch 'patch/JAL-4110_stdout_for_tests' into...
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2023-07-10
James Procter
Merge branch 'improvement/JAL-4212_remove_macos_test_java_ic...
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2023-07-10
James Procter
Merge branch 'improvement/JAL-3830_remove_dock_icon_in_headl...
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2023-07-07
James Procter
Merge branch 'patch/JAL-4195_cli_eps_export_npe' into...
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2023-07-07
James Procter
JAL-4217 JAL-629 built in 25s time out waiting for...
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2023-07-07
James Procter
JAL-4090 update 2.11.3.0 release notes (with in-progress...
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2023-07-07
James Procter
Merge branch 'patch/JAL-4119_sifts_ftp_split' into...
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2023-07-07
James Procter
Merge branch 'develop' into patch/JAL-4195_cli_eps_export_npe
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2023-07-07
James Procter
JAL-4195 add exception handling for all other CommandsTest...
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2023-07-07
James Procter
JAL-4221 update description when transferring annotation...
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2023-07-07
James Procter
JAL-629 even more console debug for --structureviewer...
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2023-07-06
James Procter
JAL-629 liberal defensive coding, comments about refactoring...
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2023-07-06
James Procter
JAL-629 make —structure image work again after threading...
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