JAL-4250 fix location and height for RNA secondary structure stem arrows

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 24fbb26..3f0c9fa 100644 (file)
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -202,7 +202,7 @@ public class AnnotationRenderer
          */
         fillPolygon(g, new int[] { lastSSX + 5, lastSSX + 5, lastSSX },
                 new int[]
-                { y + iconOffset, y + 14 + iconOffset, y + 8 + iconOffset },
+                { y + iconOffset, y + 13 + iconOffset, y + 7 + iconOffset },
                 3);
         x1 += 5;
       }
@@ -222,7 +222,7 @@ public class AnnotationRenderer
          */
         fillPolygon(g, new int[] { x2 - 5, x2 - 5, x2 },
                 new int[]
-                { y + iconOffset, y + 14 + iconOffset, y + 8 + iconOffset },
+                { y + iconOffset, y + 13 + iconOffset, y + 7 + iconOffset },
                 3);
         x2 -= 5;
       }
@@ -232,7 +232,7 @@ public class AnnotationRenderer
       }
     }
     // draw arrow body
-    fillRect(g, x1, y + 4 + iconOffset, x2 - x1, 7);
+    fillRect(g, x1, y + 4 + iconOffset, x2 - x1, 6);
   }
 
   void drawNotCanonicalAnnot(Graphics g, Color nonCanColor,