| 2012-03-01 |
jprocter | (JAL-842) ensure deletions are accounted for when highlighti...
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | (JAL-893) update to VARNAv3.9-dev version
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commit | commitdiff | tree |
| 2012-03-01 |
jprocter | Merge branch 'Release_2_7_Branch' into develop
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | (JAL-1016) noted position where race condition occurs
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | (JAL-1022) ensure all Jmol model filenames are normalised...
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | (JAL-1022) reverted to original strategy of escaping...
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | (JAL-1050) ensure all filenames passed in to the load...
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | (JAL-1025 JAL-1022) File based equivalence used to...
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | (JAL-1049) only store state reference for sequence...
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | JAL-1025 JAL-1022 use File based equivalence to map...
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commit | commitdiff | tree |
| 2012-02-12 |
Jim Procter | JAL-715 - remove platform dependent includes
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commit | commitdiff | tree |
| 2012-01-17 |
jprocter | Merge branch 'JAL-1040_jar_manifest_fix' into develop
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commit | commitdiff | tree |
| 2012-01-11 |
jprocter | Merge branch 'JAL-1023_viewall2structsw7' into Release_2_7_B...
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commit | commitdiff | tree |
| 2012-01-11 |
jprocter | removed empty lines and fields in manifest like:
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commit | commitdiff | tree |
| 2011-12-08 |
jprocter | (JAL-1023) ensure filename is properly escaped before...
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commit | commitdiff | tree |
| 2011-12-08 |
jprocter | remove commented lines
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commit | commitdiff | tree |
| 2011-12-08 |
jprocter | simple escape utility class for JAL-1023 patch
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commit | commitdiff | tree |
| 2011-11-21 |
jprocter | Merge branch 'JAL-368_dragabovedesktop' into develop
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commit | commitdiff | tree |
| 2011-11-21 |
jprocter | Merge branch 'JAL-368_dragabovedesktop' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-21 |
jprocter | (JAL-368) ensure window never gets a negative Y coordinate...
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commit | commitdiff | tree |
| 2011-11-20 |
jprocter | Merge branch 'patch_JAL-1004' into develop
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commit | commitdiff | tree |
| 2011-11-20 |
jprocter | Merge branch 'patch_JAL-1004' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-20 |
jprocter | (JAL-1004) add mouse listener to internal panel
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commit | commitdiff | tree |
| 2011-11-15 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-15 |
jprocter | todo
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commit | commitdiff | tree |
| 2011-11-14 |
jprocter | JAL-975 - ensure sequences are padded with gaps before...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'develop' of https://source.jalview.org...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into JAL-976_jabaws2supp
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into develop
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-986) rendering to imageMap counts as rendering...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into develop
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | Merge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) documentation and tooltips
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) allow different ID margin calculation...
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) preference widgets for settings
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-985,JAL-986) preferences documentation
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-986) getter for integer user preference properties
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commit | commitdiff | tree |
| 2011-11-09 |
jprocter | (JAL-980) jmol classpath patch
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commit | commitdiff | tree |
| 2011-11-08 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-08 |
jprocter | fix NPE when no annotation workers present ...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-974) - remove sun-internal class and use message...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-976,JAL-975) disorder client menu items and check...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-974,JAL-975) refactor common code for a JABAWS...
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commit | commitdiff | tree |
| 2011-11-07 |
jprocter | (JAL-975) formatting
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-975) ensure AACons is only run on protein sequences...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into develop
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) patch netbeans and installAnywhere builds
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into develop
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) use proper release number for Jmol libs ...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980,JAL-982) - applet console only allows console...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) update binding for refactored Jmol constants...
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commit | commitdiff | tree |
| 2011-11-04 |
jprocter | (JAL-980) update Jmol library to 12.2.16452 (built...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-976) JABAWSv2 client for InstallAnywhere build
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | cleanup imports
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | Merge branch 'JAL-976_jabaws2supp' into develop
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | update build notes
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-975) client for amino acid conservation service...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-974,JAL-975) new handler for JABAWS sequence and...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-976) refactored common code for JABAWS v2 service...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | tidy imports
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-978) discover JABA1 and JABA2 services and generate...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-978) refactored JABAWS2 service handle class to...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-976) upgrade to jabaws-2.0 min-client library
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-812,JAL-811) - generic test for 'calculation involving...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-811) - workers hold references to generated annotation...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-812) javadoc and api method to relayout annotation...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | (JAL-811) new 'annotation type' field for marking annotation...
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commit | commitdiff | tree |
| 2011-11-03 |
jprocter | ensure we have valid fontMetrics - (NPE was raised...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | Merge branch 'updaternasecstr_JAL-889' into develop
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-885) RNA helix and purine pyrimidine colouring...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-885 - catch race condition when rna structure width...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-969 - refactor initialisation of automatic annotation...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-885 more efficient calculation and robust for mismatch...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-885 JAL-580) ignore invalid RNA structure lines
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-902 structure conservation row for applet
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-970) interactive editing of RNA helix annotation...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-966) efficiency
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-889) ensure annotation row is revalidated after...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-885,JAL-580) structure consensus should only be...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-889) ensure latest version of RNA pairlist is...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-580 - display position where wuss parsing error...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-580 ensure WUSS annotation string is up to date...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | use stack rather than vector and throw parse exceptions
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | JAL-580 ensure WUSS annotation is reparsed if necessary...
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | NPE exception if annotation manually edited
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | extend API
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | refactor to use model API
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commit | commitdiff | tree |
| 2011-10-28 |
jprocter | (JAL-963) refactor RNA helix helper class to schemes
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | Merge branch 'refactor_aligcalcs' into develop
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) efficiency
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) fix logic bug introduced during refactoring
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) removed TODOs
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | renamed menu entry to avoid field name clash
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) todo test re refactoring and possible change...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-969) refactored alignmentViewport base class to...
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commit | commitdiff | tree |
| 2011-10-27 |
jprocter | (JAL-961) refactored consensus and rna structure consensus...
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commit | commitdiff | tree |
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