Vector regions = new Vector();
if (sg != null)
{
- // TODO test change case behaves identically in JvLite
int[][] startEnd = ap.av.getVisibleRegionBoundaries(sg.getStartRes(),
sg.getEndRes() + 1);
public void discoverPDB_actionPerformed()
{
- // TODO: test: verify PDB sequence discovery behaves correctly for group selections
final SequenceI[] sequences = ((ap.av.getSelectionGroup() == null) ? new SequenceI[]
{ sequence }
public boolean isCalcInProgress()
{
- // TODO generalise to iterate over all calculators associated with av
return calculator.isWorking();
}
*/
public void alignmentChanged(AlignmentViewPanel ap)
{
- // TODO: test jvLite always pads, and that JVD has configurable padding.
if (isPadGaps())
{
alignment.padGaps();