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JAL-1503 additional tree score functions
2014-06-03 Jim ProcterJAL-1503 additional tree score functions
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2014-06-03 Jim ProcterJAL-1503 PAM250 documentation
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2014-06-03 Jim ProcterJAL-1503 document updated PCA interface
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2014-06-03 Jim ProcterJAL-690 add .jvp as default jalview project filetype
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2014-06-03 Jim ProcterJAL-1503 formatting
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2014-06-03 Jim ProcterJAL-1503 formatting build file
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2014-06-03 Jim ProcterJAL-1512 comment out for 2.8.1 release
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2014-06-03 Jim ProcterJAL-1512 fix calculation once again and include score...
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2014-06-03 Jim ProcterJAL-1473 make it easier to generate HTML documentation...
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2014-06-02 Jim ProcterJAL-1512 rejig buggy conservation-basesd score matrix...
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2014-05-28 Jim ProcterJAL-1509 use local deployJava
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2014-05-28 Jim Procterfix for JAL-1510 - workaround for IE9
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2014-05-28 Jim ProcterJAL-1507 bugfix
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2014-05-27 Jim ProcterJAL-1509 update deployJava.js from http://www.java...
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2014-05-27 Jim ProcterJAL-1507 added loop to throw dummy javascript calls...
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2014-05-27 Jim ProcterJAL-1402 conditional logic to ensure annotation & label...
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2014-05-27 Jim ProcterJAL-1508 make default font size 11pt for embedded menus...
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2014-05-23 Jim ProcterJAL-1445 updated documentation and added link in whatsNew
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2014-05-23 Jim ProcterJAL-1445 extend functionality to select or toggle selection...
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2014-05-22 Jim Procterremove non-utf8 characters in help pages
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2014-05-22 Jim ProcterJAL-1503 update version in GPL header
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2014-05-22 Jim ProcterJAL-1355 JAL-1503 update i18n note
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2014-05-22 Jim ProcterJAL-1503 new entry for 2.8.1 release history
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2014-05-22 Jim ProcterJAL-1503 JAL-1355 note about internationalisation in...
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2014-05-17 Jim ProcterJAL-1477 documentation and tooltips
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2014-05-13 Jim ProcterMerge branch 'bugfix/JAL-1239' into Release_2_8_1_Branch_i18n
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2014-05-13 Jim ProcterJAL-1239 cancelled flag should be checked and counted
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2014-05-13 Jim ProcterJAL-1239 make doubly sure sub job status is set to...
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2014-05-12 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch_i18n
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2014-05-12 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch
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2014-05-12 Jim ProcterJAL-1397 catch other random version strings
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2014-05-12 Jim Procterpatch for regression introduced JAL-1397
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2014-05-02 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-05-02 Jim ProcterMerge branch 'JAL-1397' into Release_2_8_1_Branch
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2014-05-02 Jim ProcterJAL-1397 JAL-1066 JAL-1233 refactored annotation colours...
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2014-05-02 Jim ProcterJAL-1369 JAL-1397 version check to support correct...
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2014-05-02 Jim Procterformatting
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2014-05-02 Jim ProcterJAL-1233 JAL-1066 fix for JAL-1397 test: allow per...
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2014-05-01 Jim ProcterJAL-1397 (probably buggy) test for recovery of background...
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2014-05-01 Jim Procterremove todo
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2014-05-01 Jim ProcterJAL-1492 formatting and squash NPEs
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2014-05-01 Jim ProcterJAL-1092 TODO - allow Jalview/JalviewLite to generate...
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2014-05-01 Jim ProcterJAL-1492 JAL-1397 make AnnotatedCollectionI context...
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2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 pull up global and...
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2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 factory method to...
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2014-05-01 Jim ProcterJAL-1492 JAL-1397 JAL-643 JAL-969 modifiable flag on...
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2014-05-01 Jim Procterjavadoc
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2014-05-01 Jim Procterproperly quit so JUnit marks tests as successful
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2014-05-01 Jim ProcterJAL-1497 check to see if tree structure is ready for...
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2014-05-01 Jim Procterfix for JAL-1495 - initialise menu entry from current...
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2014-05-01 Jim Procterfix for JAL-1494 tweaked logic to fix NPEs and modify...
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2014-05-01 Jim ProcterJAL-969 remove unnecessary overrides
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2014-05-01 Jim ProcterJAL-961 configure conservation worker from alignment...
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2014-05-01 Jim ProcterJAL-961 store result of conservation analysis worker...
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2014-05-01 Jim Proctermake sure valid value for non-gapped calculation with...
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2014-04-29 Jim ProcterJAL-643 - abstracted colourscheme components to allow...
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2014-04-29 Jim ProcterMerge branch 'JAL-1340_redundancy' into Release_2_8_1_Branch
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2014-04-28 Jim ProcterJAL-1340 mark redundant sequences as soon as redundancy...
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2014-04-28 Jim ProcterJAL-1340 simpler and more efficient interactive highlighting...
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2014-04-28 Jim ProcterJAL-1340 ensure slider value wide enough to see three...
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2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch_i18n
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2014-04-27 Jim ProcterMerge branch 'JAL-1322' into Release_2_8_1_Branch
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2014-04-27 Jim ProcterJAL-1322 avoid rounding error causing non functional...
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2014-04-27 Jim ProcterJAL-1322 allow slider to reach maximum value for parameter
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2014-04-27 Jim ProcterJAL-1322 only update slider when return is pressed
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2014-04-27 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-04-27 Jim ProcterMerge branch 'JAL-952_rnahelix' into Release_2_8_1_Branch
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2014-04-27 Jim ProcterMerge branch 'JAL-1164_regression' into Release_2_8_1_Branch
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2014-04-27 Jim Procterworkaround for JAL-1319 - catch unexpected NPE thrown...
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2014-04-27 Jim ProcterJAL-1164 (regression) reinstate 'apply disorder prediction...
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2014-04-27 Jim ProcterJAL-952 JAL-1268 document TCoffee and RNA helices coloursche...
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2014-04-27 Jim ProcterJAL-952 JAL-1268 document RNA Helices and T-Coffee...
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2014-04-27 Jim ProcterJAL-952 JAL-1268 add RNA Helices and T-Coffee to list...
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2014-04-27 Jim ProcterJAL-952 resolve colour scheme as 'RNA Helices'
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2014-04-27 Jim ProcterJAL-952 refactor code to select annotation for colouring...
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2014-04-27 Jim Proctertest for JAL-952
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2014-04-25 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-04-25 Jim ProcterMerge branch 'JAL-1177_prop_rnasecstr' into Release_2_8_1_Branch
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2014-04-25 Jim Procterfix for JAL-1268
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2014-04-25 Jim Proctertest for JAL-1268
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2014-04-25 Jim ProcterJAL-1177 additional saveState calls to write a dataset...
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2014-04-25 Jim ProcterJAL-1177 patches to loader to cope with dataset only...
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2014-04-25 Jim ProcterJAL-1177 new flag to write a dataset only jalview XML...
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2014-04-25 Jim ProcterJAL-1177 allow jalview alignments to be saved that...
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2014-04-25 Jim ProcterJAL-1177 propagate sequence associated annotation to...
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2014-04-25 Jim ProcterJAL-1177 refactored command line test harness
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2014-04-25 Jim Proctertest for JAL-1177 store and recover RNA secondary structure...
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2014-04-24 Jim ProcterJAL-1232 fix - ensure display all columns flag is set...
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2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8_1_Br...
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2014-04-23 Jim ProcterMerge branch 'JAL-1486_hiddenStartEnd' into Release_2_8_1_Branch
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2014-04-23 Jim ProcterJAL-1486 todo for 2.8.2 release
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2014-04-23 Jim ProcterMerge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-04-23 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
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2014-04-21 Jim ProcterJAL-1458 updated logo for installer
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2014-04-21 Jim ProcterJAL-1383 scrubbed envision GUI and documentation
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2014-04-21 Jim ProcterJAL-1355 keys for colours
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2014-04-21 Jim Procterfix for JAL-1438
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2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch_i18n
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2014-04-21 Jim ProcterMerge branch 'jims_marckhacks' into Release_2_8_1_Branch
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2014-04-21 Jim ProcterJAL-1473 define defaults for DNA/Protein PCA calculation
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