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2006-07-25	amwaterhouse	Odd edit bug with represented seqs fixed	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Dont add pdb format here	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	1.1 compatible	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Moved to datamodel	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Output menus added	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Repaint	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Dont make new image unless resize	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Reorder popupmenu	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Renamed files not to conflict with BIOJAVA	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	jalview.biojava	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	x < endres-startres	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	x < endres-startres	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Add dbrefs to mouseover	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Must be 1.1 compliant	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Remove associate menu	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	FileLoader replaces paste when Dropping files	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Associate pdb files	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	pdb fetchDataAsFile	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	PDB format added	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	pdb stuff moved to popupmenu	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Can have local file	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	If seq has a dataset, dont clear it	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Extends AlignFile, dataset has PDBEntry added	commit \| commitdiff \| tree
2006-07-25	amwaterhouse	Can load PDB file from disk	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	correct icon draw bug	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Corrected hidden row feature render bug	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Put DBRefFether in a new thread	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Remove start end for now??	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Add pdb ref	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	getViewAsString can ignore sequenceGroup	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	this.seqs = seqs	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	hidden seqs added	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	dbrefs added	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	show hide stuff moved from columnSelection	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Saves hidden seqs and DBRefs	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	av.showHiddenMarkers check	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Show hide cols and rows	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Hide Selected Cols	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	DBRefs now array	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	getFullAlignment	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Remove note	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	DBRef is an array, not vector	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	DBRefs and HiddenRegions saved	commit \| commitdiff \| tree
2006-07-21	amwaterhouse	Load tree from file constructor fixed	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Make new seq[] when modifying hidden bits	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Remove b keystroke	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	showTranslation is not a checkbox	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Merge new frame buttons added	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Output to text window added	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Correct highlighted res height	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Save output use whole alignment	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Original tree data output in PFAM format	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Count uniprot refs	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Highlight hidden columns after revealing	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	datasetSeq bug	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Check for all gapped seqs	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Use Selection group to define sequence range to fetch...	commit \| commitdiff \| tree
2006-07-19	amwaterhouse	Copy works with selection area	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Modified for hidden region/group calculation	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Use selection area with hidden columns in calculations	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	omitHiddenColumns	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Button to view original data	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Takes strings, not seqs	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	getSelectionAsNewSequence added	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Takes a string, not sequence	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Works on strings, not seqs	commit \| commitdiff \| tree
2006-07-18	amwaterhouse	Takes string[] instead of seq[]	commit \| commitdiff \| tree
2006-07-17	amwaterhouse	Towards an auto dbref fetcher	commit \| commitdiff \| tree
2006-07-17	amwaterhouse	Dasobert updates, labels and prefix changes	commit \| commitdiff \| tree
2006-07-14	amwaterhouse	Just fetch features for selected seqs	commit \| commitdiff \| tree
2006-07-13	amwaterhouse	DAS feature retrieval updated	commit \| commitdiff \| tree
2006-07-13	amwaterhouse	Selected DAS sources may differ from default	commit \| commitdiff \| tree
2006-07-13	amwaterhouse	Sequence is private	commit \| commitdiff \| tree
2006-07-12	amwaterhouse	Launch full app parameter takes servlet URL	commit \| commitdiff \| tree
2006-07-12	amwaterhouse	Das source browser	commit \| commitdiff \| tree
2006-07-12	amwaterhouse	Authority, type and labels	commit \| commitdiff \| tree
2006-07-12	amwaterhouse	sequences are private in SequenceGroup	commit \| commitdiff \| tree
2006-07-12	amwaterhouse	Append start and end	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Dont discard label if different to H or E	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Redundant Remove Redundancy Removed	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Sequence numbering maintained	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Changeable background colour	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Make sure bond has a colour	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Make sure atom has a colour	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Highlight sequences before seleting	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Corrected for hidden rows	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Row might have height of zero	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	check control down if c pressed in cursor mode	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	changeColour is public	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Coms might be null	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	New panel layouts	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Offsets	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Optimised PID method	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Make 1.1 compatible	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Move position of stopLoading for 1.5 people	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	make 1.1 compatible	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Dont write graph type twice	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Checks on drawing characters and if sequence ref has...	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Colour argument added, to mirror applet view	commit \| commitdiff \| tree
2006-07-07	amwaterhouse	Prepare for launchFullApplication	commit \| commitdiff \| tree
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