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JAL-4409 Add jalviewhttp and jalviewhttps schemes to register in install4j. Recognis...
2023-10-02 jprocterJAL-4090 more JAL-3858 docs
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2023-10-02 jprocterMerge branch 'develop' into doc/JAL-4090_Release_2_11_3_0
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2022-03-04 Jim ProcterJAL-3746 JAL-3811 document SHOW_JWS2_SERVICES user...
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2022-03-04 Jim ProcterJAL-3746 JAL-3812 new argument ‘-nohtmltemplates’ and...
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2022-03-04 Jim ProcterJAL-3746 JAL-3813 NOIDENTIFIERSSERVICE preference disables...
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2022-03-04 Jim ProcterJAL-3746 JAL-3814 don’t automatically launch the news...
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2022-03-04 Jim ProcterJAL-3746 JAL-3814 NONEWS property
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2021-09-17 Jim ProcterJAL-1260 FileFormat entry for EMBL/GENBANK: TODO: create...
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2021-09-16 Jim ProcterJAL-3794 X and N are counted as DNA characters, but...
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2021-09-16 Jim ProcterJAL-3794 new test for recognition of protein or DNA...
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2021-09-14 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
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2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy
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2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps
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2021-06-09 Jim Procterfixes JAL-3840
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2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows
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2021-06-09 Jim ProcterJAL-3842 2.11.1.5 what’s new, release notes, and version...
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2021-06-09 Jim ProcterMerge branch 'patch/JAL-3840_2_11_1_4' into releases...
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2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps
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2021-06-09 Jim Procterfixes JAL-3840
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2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows
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2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code...
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2021-03-15 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
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2021-03-09 Jim ProcterJAL-3816 release date updated to 9th March
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2021-03-05 Jim ProcterJAL-3816 release date set for 8th March and updated...
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2021-03-05 Jim ProcterJAL-3816 new known defects JAL-3705 and JAL-3806
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2021-03-04 Jim ProcterRevert "Merge branch 'bug/JAL-3806_mappingCoversSequence...
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2021-03-04 Jim ProcterRevert "JAL-3816 release notes for JAL-3806"
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2021-02-26 Jim ProcterJAL-3816 release notes for JAL-3806
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2021-02-26 Jim ProcterMerge branch 'bug/JAL-3806_mappingCoversSequence' into...
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2021-02-26 Jim ProcterJAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818...
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2021-02-24 Jim ProcterMerge branch 'bug/JAL-3818_jmolDeadlock' into releases...
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2021-02-24 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
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2021-02-17 Jim ProcterJAL-3821 patch for 2.11.2 to retrieve RNA ENA records...
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2021-02-17 Jim ProcterMerge branch 'feature/JAL-3692enaEndpoint' into patch...
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2021-02-07 Jim ProcterJAL-3816 bump version number and cut release notes
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2021-02-07 Jim ProcterJAL-3815 default /etc/jalview_properties under utils...
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2021-02-05 Jim ProcterMerge branch 'task/JAL-3521_Slimmed_down_build.gradle_for_de...
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2021-02-05 Jim ProcterMerge branch 'releases/Release_2_11_1_4_debianpatches...
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2021-02-05 Jim ProcterJAL-3814 don’t automatically launch the news browser...
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2021-02-05 Jim ProcterJAL-3813 NOIDENTIFIERSSERVICE preference disables jalview...
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2021-02-05 Jim ProcterJAL-3812 new argument ‘-nohtmltemplates’ and user preference...
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2021-02-05 Jim ProcterJAL-3811 document SHOW_JWS2_SERVICES user preference...
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2021-02-05 Jim ProcterJAL-3814 NONEWS property
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2020-11-13 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
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2020-10-29 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
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2020-10-29 Jim ProcterJAL-3766 what’s new and release notes for 2.11.1.3
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2020-10-29 Jim ProcterJAL-3759 fix compilation error for test
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2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3759
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2020-10-29 Jim Procter JAL-3759 exclude hidden columns when processing...
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2020-10-29 Jim ProcterMerge branch 'documentation/JAL-3766_relnotes' into...
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2020-10-29 Jim ProcterJAL-3766 release notes for JAL-3765 JAL-3763 JAL-3760...
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2020-10-29 Jim ProcterMerge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3...
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2020-10-28 Jim ProcterJAL-3725 fix tests for EMBLFlatFile parser when mapping...
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2020-10-28 Jim ProcterJAL-3725 patch EMBL flat file to exclude stop codon...
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2020-10-28 Jim ProcterJAL-3760 fix tests for changed behaviour
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2020-10-28 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
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2020-10-28 Jim ProcterMerge branch 'bug/JAL-3760_protsTreatedAsNucleotides...
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2020-10-28 Jim ProcterMerge branch 'portforward/JAL-3765_patch_to_2112' into...
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2020-10-28 Jim ProcterJAL-3765 fix test
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2020-10-28 Jim Procterfix for JAL-3765
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2020-10-27 Jim ProcterJAL-3768 noticed failure of test when run as part of...
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2020-10-27 Jim ProcterJAL-3700 JAL-3748 JAL-3763 don’t add stop codon via...
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2020-10-27 Jim Procterupdate test for JAL-3763 redact shared DS sequences...
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2020-10-21 Jim ProcterJAL-3766 release notes for JAL-3611 JAL-3765
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2020-10-21 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of http...
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2020-10-21 Jim ProcterMerge branch 'bug/JAL-3765_Find_bugs_in_21112' into...
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2020-10-21 Jim ProcterJAL-3766 cut new patch release
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2020-10-21 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
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2020-10-20 Jim ProcterJAL-3765 fix test
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2020-10-20 Jim Procterfix for JAL-3765
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2020-10-19 Jim ProcterJAL-3765 simple test that findAll finds all matches...
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2020-10-02 Jim ProcterJAL-3762 check for !args || args=="" before overwriting
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2020-10-02 Jim ProcterJAL-3762 more typo fixing :q
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2020-10-02 Jim ProcterJAL-3762 syntax error typo
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2020-10-02 Jim ProcterJAL-3762 check if Info.args already defined before...
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2020-09-29 Jim ProcterJAL-3760 fix tests for changed behaviour
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2020-09-29 Jim ProcterJAL-3760 refactor nucleotide proportion test to per...
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2020-09-25 Jim ProcterJAL-3758 tweak what’s new for 2.11.1.2!
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2020-09-25 Jim ProcterJAL-3758 release Fri 25th Sep
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2020-09-25 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch' of http...
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2020-09-24 Jim ProcterJAL-3758 2.11.1.2 patch release notes and version bump
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2020-09-24 Jim ProcterJAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
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2020-09-23 Jim ProcterJAL-3748 not testing for sequence’s containment in...
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2020-09-23 Jim ProcterJAL-3748 fix compilation error
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2020-09-23 Jim ProcterJAL-3748 maximal test for JAL-3748 using covid19 CDS...
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2020-09-23 Jim ProcterJAL-3748 more tests verifying reconstruction of AlignemntVie...
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2020-09-23 Jim ProcterJAL-3748 reusable assert to trace specific issues with...
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2020-09-23 Jim ProcterJAL-3748 allow AlignedCodonFrame.covers to optionally...
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2020-09-22 Jim ProcterJAL-3748 test data for SplitFrameTest
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2020-09-22 Jim ProcterJAL-3748 don’t trash start/end on SequenceI reconstructed...
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2020-09-22 Jim ProcterJAL-3748 simple test for SeqCigar preservation of start...
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2020-09-22 Jim ProcterJAL-3748 additional asserts to verify start/end after...
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2020-09-21 Jim ProcterMerge branch 'merge_review/JAL-3490_2_11_2_develop...
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2020-09-17 Jim ProcterMerge branch 'releases/Release_2_11_1_Branch'
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2020-09-17 Jim ProcterJAL-3675 release notes for JAL-3750 JAL-3751
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2020-09-17 Jim ProcterMerge branch 'patch/JAL-3750_JAL-3741_https_patch'...
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2020-09-17 Jim ProcterJAL-3741 http to https (and jar to jvp for exampleFile...
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2020-09-17 Jim ProcterJAL-3750 parse protocol before checking if argument...
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2020-09-17 Jim ProcterJAL-3675 patch release date 17th September 2020
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2020-09-16 Jim ProcterJAL-3748 preserve sequence IDs from original alignment...
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