git://source.jalview.org
/
jalview.git
/ search
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
first ⋅ prev ⋅
next
JAL-3933 remove obsolete Castor logging configuration
2021-06-09
Jim Procter
JAL-3842 2.11.1.5 what’s new, release notes, and version...
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
Merge branch 'patch/JAL-3840_2_11_1_4' into releases...
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3840 don’t update the modal residue count for gaps
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
fixes JAL-3840
commit
|
commitdiff
|
tree
2021-06-09
Jim Procter
JAL-3840 failing test - show that addGaps overflows
commit
|
commitdiff
|
tree
2021-03-09
Jim Procter
JAL-3816 release date updated to 9th March
commit
|
commitdiff
|
tree
2021-03-05
Jim Procter
JAL-3816 release date set for 8th March and updated...
commit
|
commitdiff
|
tree
2021-03-05
Jim Procter
JAL-3816 new known defects JAL-3705 and JAL-3806
commit
|
commitdiff
|
tree
2021-03-04
Jim Procter
Revert "Merge branch 'bug/JAL-3806_mappingCoversSequence...
commit
|
commitdiff
|
tree
2021-03-04
Jim Procter
Revert "JAL-3816 release notes for JAL-3806"
commit
|
commitdiff
|
tree
2021-02-26
Jim Procter
JAL-3816 release notes for JAL-3806
commit
|
commitdiff
|
tree
2021-02-26
Jim Procter
Merge branch 'bug/JAL-3806_mappingCoversSequence' into...
commit
|
commitdiff
|
tree
2021-02-26
Jim Procter
JAL-3816 JAL-3814 JAL-3813 JAL-3812 JAL-3811 JAL-3818...
commit
|
commitdiff
|
tree
2021-02-24
Jim Procter
Merge branch 'bug/JAL-3818_jmolDeadlock' into releases...
commit
|
commitdiff
|
tree
2021-02-24
Jim Procter
Merge branch 'releases/Release_2_11_1_4_debianpatches...
commit
|
commitdiff
|
tree
2021-02-07
Jim Procter
JAL-3816 bump version number and cut release notes
commit
|
commitdiff
|
tree
2021-02-07
Jim Procter
JAL-3815 default /etc/jalview_properties under utils...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
Merge branch 'task/JAL-3521_Slimmed_down_build.gradle_for_de...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
Merge branch 'releases/Release_2_11_1_4_debianpatches...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3814 don’t automatically launch the news browser...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3813 NOIDENTIFIERSSERVICE preference disables jalview...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3812 new argument ‘-nohtmltemplates’ and user preference...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3811 document SHOW_JWS2_SERVICES user preference...
commit
|
commitdiff
|
tree
2021-02-05
Jim Procter
JAL-3814 NONEWS property
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3766 what’s new and release notes for 2.11.1.3
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3759 fix compilation error for test
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3766 release notes for JAL-3759
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3759 exclude hidden columns when processing...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
Merge branch 'documentation/JAL-3766_relnotes' into...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
JAL-3766 release notes for JAL-3765 JAL-3763 JAL-3760...
commit
|
commitdiff
|
tree
2020-10-29
Jim Procter
Merge branch 'patch/JAL-3700_JAL-3748_JAL-3763_for_2_11_1_3...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
JAL-3725 fix tests for EMBLFlatFile parser when mapping...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
JAL-3725 patch EMBL flat file to exclude stop codon...
commit
|
commitdiff
|
tree
2020-10-28
Jim Procter
Merge branch 'bug/JAL-3760_protsTreatedAsNucleotides...
commit
|
commitdiff
|
tree
2020-10-27
Jim Procter
JAL-3768 noticed failure of test when run as part of...
commit
|
commitdiff
|
tree
2020-10-27
Jim Procter
JAL-3700 JAL-3748 JAL-3763 don’t add stop codon via...
commit
|
commitdiff
|
tree
2020-10-27
Jim Procter
update test for JAL-3763 redact shared DS sequences...
commit
|
commitdiff
|
tree
2020-10-21
Jim Procter
JAL-3766 release notes for JAL-3611 JAL-3765
commit
|
commitdiff
|
tree
2020-10-21
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch' of http...
commit
|
commitdiff
|
tree
2020-10-21
Jim Procter
Merge branch 'bug/JAL-3765_Find_bugs_in_21112' into...
commit
|
commitdiff
|
tree
2020-10-21
Jim Procter
JAL-3766 cut new patch release
commit
|
commitdiff
|
tree
2020-10-20
Jim Procter
JAL-3765 fix test
commit
|
commitdiff
|
tree
2020-10-20
Jim Procter
fix for JAL-3765
commit
|
commitdiff
|
tree
2020-10-19
Jim Procter
JAL-3765 simple test that findAll finds all matches...
commit
|
commitdiff
|
tree
2020-09-29
Jim Procter
JAL-3760 fix tests for changed behaviour
commit
|
commitdiff
|
tree
2020-09-29
Jim Procter
JAL-3760 refactor nucleotide proportion test to per...
commit
|
commitdiff
|
tree
2020-09-25
Jim Procter
JAL-3758 tweak what’s new for 2.11.1.2!
commit
|
commitdiff
|
tree
2020-09-25
Jim Procter
JAL-3758 release Fri 25th Sep
commit
|
commitdiff
|
tree
2020-09-25
Jim Procter
Merge branch 'releases/Release_2_11_1_Branch' of http...
commit
|
commitdiff
|
tree
2020-09-24
Jim Procter
JAL-3758 2.11.1.2 patch release notes and version bump
commit
|
commitdiff
|
tree
2020-09-24
Jim Procter
JAL-3757 JAL-3689 use AppletFormat.checkProtocol to...
commit
|
commitdiff
|
tree
2020-09-23
Jim Procter
JAL-3748 not testing for sequence’s containment in...
commit
|
commitdiff
|
tree
2020-09-23
Jim Procter
JAL-3748 fix compilation error
commit
|
commitdiff
|
tree
2020-09-23
Jim Procter
JAL-3748 maximal test for JAL-3748 using covid19 CDS...
commit
|
commitdiff
|
tree
2020-09-23
Jim Procter
JAL-3748 more tests verifying reconstruction of AlignemntVie...
commit
|
commitdiff
|
tree
2020-09-23
Jim Procter
JAL-3748 reusable assert to trace specific issues with...
commit
|
commitdiff
|
tree
2020-09-23
Jim Procter
JAL-3748 allow AlignedCodonFrame.covers to optionally...
commit
|
commitdiff
|
tree
2020-09-22
Jim Procter
JAL-3748 test data for SplitFrameTest
commit
|
commitdiff
|
tree
2020-09-22
Jim Procter
JAL-3748 don’t trash start/end on SequenceI reconstructed...
commit
|
commitdiff
|
tree
2020-09-22
Jim Procter
JAL-3748 simple test for SeqCigar preservation of start...
commit
|
commitdiff
|
tree
2020-09-22
Jim Procter
JAL-3748 additional asserts to verify start/end after...
commit
|
commitdiff
|
tree
2020-09-17
Jim Procter
JAL-3675 release notes for JAL-3750 JAL-3751
commit
|
commitdiff
|
tree
2020-09-17
Jim Procter
Merge branch 'patch/JAL-3750_JAL-3741_https_patch'...
commit
|
commitdiff
|
tree
2020-09-17
Jim Procter
JAL-3741 http to https (and jar to jvp for exampleFile...
commit
|
commitdiff
|
tree
2020-09-17
Jim Procter
JAL-3750 parse protocol before checking if argument...
commit
|
commitdiff
|
tree
2020-09-17
Jim Procter
JAL-3675 patch release date 17th September 2020
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3748 preserve sequence IDs from original alignment...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3748 recover complement alignment from complement...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3748 make findAlignedSequence require mapped from...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3748 pass a list to findAlignedSequence to return...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3700 JAL-3748 use AlignedCodonFrame.covers(seq...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3700 JAL-3748 AlignedCodonFrame.covers(seq,true...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
Merge branch 'failingTest/JAL-3748_reconstructCDSafterProtei...
commit
|
commitdiff
|
tree
2020-09-16
Jim Procter
JAL-3748 store an AlignmentView for the complement...
commit
|
commitdiff
|
tree
2020-09-15
Jim Procter
JAL-3675 logged JAL-3748 as known defect
commit
|
commitdiff
|
tree
2020-09-15
Jim Procter
JAL-3765 JAL-3718 release notes
commit
|
commitdiff
|
tree
2020-09-15
Jim Procter
Merge branch 'patch/JAL-3718_fixed_getdown_patched_for_Relea...
commit
|
commitdiff
|
tree
2020-09-15
Jim Procter
JAL-3675 typo in release notes :(
commit
|
commitdiff
|
tree
2020-09-15
Jim Procter
JAL-3675 update release date and release notes for...
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
JAL-3675 update release date and release notes for...
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
Merge branch 'improvement/JAL-3280_Migrate_the_VersionChecke...
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
JAL-3675 whats new, logging and release notes tidying...
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
JAL-3676 rework logging docs.
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
Merge branch 'bug/JAL-3718_Getdown_does_not_autoupdate_corre...
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
JAL-3676 remove mention of Castor
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
JAL-3675 tweak release notes for JAL-3667, JAL-3702
commit
|
commitdiff
|
tree
2020-09-03
Jim Procter
JAL-3675 update sequence fetcher service documentation...
commit
|
commitdiff
|
tree
2020-08-31
Jim Procter
JAL-3680 merged description of individual cursor key...
commit
|
commitdiff
|
tree
2020-08-31
Jim Procter
JAL-3732 - sequences can be moved up/down in cursor...
commit
|
commitdiff
|
tree
2020-08-25
Jim Procter
report JAL-3127 as known defect (fix targeted for 2...
commit
|
commitdiff
|
tree
2020-08-25
Jim Procter
JAL-3671 hardwire log4j.root logger to INFO to supress...
commit
|
commitdiff
|
tree
2020-08-21
Jim Procter
JAL-3675 2.11.1.1 java 8 compatible patch for JAL-3615...
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
JAL-3675 release notes for JAL-3691
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
Merge branch 'patch/JAL-3691_No_score_models_available...
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
JAL-3675 JAL-3561 documented in release notes
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
JAL-3675 report JAL-3702 as known defect
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
Merge branch 'patch/JAL-3561_JAL-3660_fileformatexport_CLI...
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
JAL-3712 fix typos for rebuilding/updating getdown...
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
JAL-3490 JAL-3675 release notes, update Find dialog...
commit
|
commitdiff
|
tree
2020-08-17
Jim Procter
Merge branch 'patch/Release_2_11_1_Branch_patch_JAL...
commit
|
commitdiff
|
tree
next