2017-10-06 |
gmungoc | JAL-2754 update to Java 1.8
|
commit | commitdiff | tree |
2017-10-06 |
gmungoc | JAL-2738 unit test for mapping failure case
|
commit | commitdiff | tree |
2017-10-05 |
gmungoc | JAL-2738 update spikes/mungo
|
commit | commitdiff | tree |
2017-10-05 |
gmungoc | JAL-2738 warn (in console) when non chromosomal coordinates...
|
commit | commitdiff | tree |
2017-10-05 |
gmungoc | JAL-2738 helper method for convolving mappings
|
commit | commitdiff | tree |
2017-10-05 |
gmungoc | JAL-2755 transfer chromosomal reference from transcript...
|
commit | commitdiff | tree |
2017-10-05 |
gmungoc | JAL-2738 method to compound / traverse / convolve two...
|
commit | commitdiff | tree |
2017-10-05 |
gmungoc | JAL-2744 add score to feature details report, description...
|
commit | commitdiff | tree |
2017-10-04 |
gmungoc | Merge branch 'features/JAL-1793VCF' into spikes/mungo
|
commit | commitdiff | tree |
2017-10-04 |
gmungoc | JAL-2738 fix bug of premature exit from adding attributes
|
commit | commitdiff | tree |
2017-10-04 |
gmungoc | JAL-2523 start of refactoring...
|
commit | commitdiff | tree |
2017-10-04 |
gmungoc | JAL-2738 match consequence "Allele" to VCF allele;...
|
commit | commitdiff | tree |
2017-10-04 |
gmungoc | JAL-2744 handle null features list
|
commit | commitdiff | tree |
2017-10-03 |
gmungoc | JAL-2738 copy to spikes/mungo
|
commit | commitdiff | tree |
2017-10-03 |
gmungoc | JAL-2738 update test for threaded VCFLoader
|
commit | commitdiff | tree |
2017-10-03 |
gmungoc | JAL-2738 code formatting
|
commit | commitdiff | tree |
2017-10-02 |
gmungoc | JAL-2738 code tidy up, null checks &c
|
commit | commitdiff | tree |
2017-10-02 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
2017-10-02 |
gmungoc | JAL-2525 lookup transcript features by Ontology
|
commit | commitdiff | tree |
2017-10-02 |
gmungoc | JAL-2738 filter VEP consequence data to that for current...
|
commit | commitdiff | tree |
2017-09-29 |
gmungoc | JAL-2738 one sequence feature per (SNP) VCF allele
|
commit | commitdiff | tree |
2017-09-29 |
gmungoc | JAL-2744 indent CSQ lines to catch the eye
|
commit | commitdiff | tree |
2017-09-29 |
gmungoc | JAL-2745 update www.ebi.ac.uk to https
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | JAL-2745 update www.ebi.ac.uk to https
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | JAL-2738 separate thread to load VCF; update FeatureSettings...
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | JAL-2036 set menus after fully loading AlignFrame
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | JAL-1796 GeneLociI as distinguished DBRefEntry
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | JAL-2744 simple Feature Details report from Popup menu
|
commit | commitdiff | tree |
2017-09-28 |
gmungoc | JAL-2744 refactor PopupMenu constructor to enable adding...
|
commit | commitdiff | tree |
2017-09-26 |
gmungoc | JAL-2738 transfer VCF variant features to CDS sequences
|
commit | commitdiff | tree |
2017-09-26 |
gmungoc | JAL-2738 JAL-2154 add DBRef from transcript to synthesized...
|
commit | commitdiff | tree |
2017-09-26 |
gmungoc | JAL-2738 unit test for reverse strand gene
|
commit | commitdiff | tree |
2017-09-26 |
gmungoc | JAL-2738 promote setGeneLoci to SequenceI!
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | JAL-2738 use complement base for a VCF variant on reverse...
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | JAL-2738 getGeneLoci promoted to SequenceI
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | Merge branch 'develop' into features/JAL-1793VCF
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | JAL-2525 return no features if none matches ontology...
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | JAL-2738 query unindexed file, unit test for VCFLoader
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | JAL-2738 one constant in codebase for "alleles" attribute of
|
commit | commitdiff | tree |
2017-09-25 |
gmungoc | JAL-2738 extract SNP variants from SNP or MIXED variant...
|
commit | commitdiff | tree |
2017-09-22 |
gmungoc | JAL-2738 extract utility method to MappingUtils
|
commit | commitdiff | tree |
2017-09-22 |
gmungoc | JAL-2738 correct handling of reverse strand genes
|
commit | commitdiff | tree |
2017-09-22 |
gmungoc | JAL-2738 lookup GRCh38/37 gene mapping
|
commit | commitdiff | tree |
2017-09-21 |
gmungoc | JAL-2738 compute VCF on peptide, extract AF (allele...
|
commit | commitdiff | tree |
2017-09-21 |
gmungoc | JAL-2738 add chromosome coordinate mappings to transcripts
|
commit | commitdiff | tree |
2017-09-21 |
gmungoc | JAL-2738 PoC of Load VCF file on to gene sequence
|
commit | commitdiff | tree |
2017-09-21 |
gmungoc | JAL-2738 GeneLoci holds mapping of sequence to chromosome
|
commit | commitdiff | tree |
2017-09-19 |
gmungoc | JAL-1793 wrapper for plain or indexed VCF + simple...
|
commit | commitdiff | tree |
2017-09-19 |
gmungoc | JAL-1793 simple tests of reading raw and indexed VCF...
|
commit | commitdiff | tree |
2017-09-18 |
gmungoc | Merge remote-tracking branch 'origin/patch/JAL-2732...
|
commit | commitdiff | tree |
2017-09-18 |
gmungoc | JAL-2728 fine tuned initial split of split frame view
|
commit | commitdiff | tree |
2017-09-15 |
gmungoc | JAL-2728 use right denominator for min/max ratio calculations
|
commit | commitdiff | tree |
2017-09-15 |
gmungoc | JAL-2728 limit divider to ensure seqs visible (wip!)
|
commit | commitdiff | tree |
2017-09-15 |
gmungoc | JAL-741 add tooltip to feature group checkbox
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 unit test added
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 test with seq start > 1 (and fix Undo bug...
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 it works!! it works!!!
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 clean unit test of cut/undo (ungapped sequence)
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 more useful assert message
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 save/Undo only 'diffs' for features with Cut...
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 adjust end of contact feature spanning cut...
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 clearer comments (redo of lost commit f7967ad)
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 length check in deleteChars (redoing lost...
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 working Cut/Undo with feature relocation
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2541 revised cut with features (work in progress)
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2727 null more fields in AlignmentViewport.dispose...
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2727 add SelectionGroup, Tree and PCA to test
|
commit | commitdiff | tree |
2017-09-14 |
gmungoc | JAL-2727 method to check if PCAPanel thread is working
|
commit | commitdiff | tree |
2017-09-13 |
gmungoc | JAL-2727 alignment width and height tailored to this...
|
commit | commitdiff | tree |
2017-09-13 |
gmungoc | JAL-2727 null additional references on close
|
commit | commitdiff | tree |
2017-09-12 |
gmungoc | Merge branch 'bug/JAL-2721fastPaintNPE' into develop
|
commit | commitdiff | tree |
2017-09-12 |
gmungoc | Revert "JAL-2727 null hconsensus, "
|
commit | commitdiff | tree |
2017-09-12 |
gmungoc | JAL-2727 null hconsensus,
|
commit | commitdiff | tree |
2017-09-12 |
gmungoc | JAL-2727 first pass of test of memory recovery on close all
|
commit | commitdiff | tree |
2017-09-12 |
gmungoc | JAL-2727 ensure ViewportRanges (and gapcounts) are...
|
commit | commitdiff | tree |
2017-09-07 |
gmungoc | JAL-2511 invalidate scale panel holder on font change...
|
commit | commitdiff | tree |
2017-09-07 |
gmungoc | JAL-2511 invalidate scale panel holder on font change...
|
commit | commitdiff | tree |
2017-09-06 |
gmungoc | JAL-2721 no fastPaint if img has been nulled by fontChanged!
|
commit | commitdiff | tree |
2017-09-06 |
gmungoc | JAL-2721 no fastPaint if img has been nulled by fontChanged!
|
commit | commitdiff | tree |
2017-09-06 |
gmungoc | Merge remote-tracking branch 'origin/bug/JAL-2722'...
|
commit | commitdiff | tree |
2017-09-05 |
gmungoc | JAL-2665 check for null selection group image
|
commit | commitdiff | tree |
2017-09-05 |
gmungoc | JAL-2665 check for null selection group image
|
commit | commitdiff | tree |
2017-09-05 |
gmungoc | JAL-2225 unused collateForPdb removed
|
commit | commitdiff | tree |
2017-09-05 |
gmungoc | JAL-2225 fix bug in collating unique pdb files and...
|
commit | commitdiff | tree |
2017-09-04 |
gmungoc | JAL-2617 unit tests for CDS + stop codon, CDS with...
|
commit | commitdiff | tree |
2017-09-01 |
gmungoc | JAL-2617 omit stop codon from synthesized CDS sequence
|
commit | commitdiff | tree |
2017-09-01 |
gmungoc | JAL-2216 remove alignment listener when Tree Panel...
|
commit | commitdiff | tree |
2017-09-01 |
gmungoc | JAL-2488 remove finalize methods
|
commit | commitdiff | tree |
2017-08-31 |
gmungoc | JAL-2105 REST versions updated to 6.1 (Ensembl) 6.0...
|
commit | commitdiff | tree |
2017-08-31 |
gmungoc | JAL-2253 safer simpler resolution of identifiers using...
|
commit | commitdiff | tree |
2017-08-31 |
gmungoc | JAL-2704 unit test for Above PID gap colour, simplified...
|
commit | commitdiff | tree |
2017-08-30 |
gmungoc | JAL-2704 don't shade gap colour for PID/conservation
|
commit | commitdiff | tree |
2017-08-30 |
gmungoc | JAL-2685 score matrix in sysout formatted with sequence...
|
commit | commitdiff | tree |
2017-08-30 |
gmungoc | JAL-2685 tweaks to output spacing, updated TestAlignSeq...
|
commit | commitdiff | tree |
2017-08-30 |
gmungoc | JAL-2685 use actual selection for report of pairwise...
|
commit | commitdiff | tree |
2017-08-28 |
gmungoc | Merge branch 'bug/JAL-2687concurrentModification' into...
|
commit | commitdiff | tree |
2017-08-28 |
gmungoc | JAL-2608 close any Overview when alignment view is...
|
commit | commitdiff | tree |
2017-08-25 |
gmungoc | JAL-2687 use Iterator.remove() for safe deletion while...
|
commit | commitdiff | tree |
2017-08-25 |
gmungoc | JAL-2480 suppress debug timing output that got left in
|
commit | commitdiff | tree |
next |