| 2009-11-23 |
jprocter | initialise current and defaultAlignFrame and debug...
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commit | commitdiff | tree |
| 2009-11-13 |
jprocter | make fileparse errors easier to debug by dumping file...
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commit | commitdiff | tree |
| 2009-11-11 |
jprocter | additional instructions and use of -jar for launching
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commit | commitdiff | tree |
| 2009-11-09 |
jprocter | more spin on GA prompt
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commit | commitdiff | tree |
| 2009-11-09 |
jprocter | no Vector(Vector) copy constructor in 1.2
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commit | commitdiff | tree |
| 2009-11-09 |
jprocter | user friendly GA and privacy statement
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commit | commitdiff | tree |
| 2009-11-06 |
jprocter | only append score if it is not NaN
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commit | commitdiff | tree |
| 2009-11-06 |
jprocter | properly import column selection from message
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commit | commitdiff | tree |
| 2009-11-06 |
jprocter | potential null pointer fix
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commit | commitdiff | tree |
| 2009-11-06 |
jprocter | setting and merging selected columns from another selection...
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commit | commitdiff | tree |
| 2009-11-06 |
jprocter | better formed generic select residue X expression
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commit | commitdiff | tree |
| 2009-11-04 |
jprocter | empty row removed
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commit | commitdiff | tree |
| 2009-11-04 |
jprocter | removed duplicate descriptions, documented nodisplay...
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commit | commitdiff | tree |
| 2009-11-03 |
jprocter | updated dependencies and versions for example jnlp
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commit | commitdiff | tree |
| 2009-11-03 |
jprocter | pasted file contents should never be added to the recent...
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commit | commitdiff | tree |
| 2009-11-02 |
jprocter | gracefully cope with non-standard nucleotide or amino...
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commit | commitdiff | tree |
| 2009-11-02 |
jprocter | gracefully cope with non-standard nucleotide or amino...
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commit | commitdiff | tree |
| 2009-10-30 |
jprocter | na pdb: highlight any part of a residue, not just the...
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commit | commitdiff | tree |
| 2009-10-30 |
jprocter | na pdb: recognise NA residue names
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commit | commitdiff | tree |
| 2009-10-30 |
jprocter | na pdb: detect P backbone
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commit | commitdiff | tree |
| 2009-10-29 |
jprocter | add JGoogleAnalytics webstart resource
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | todo
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | typo
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | finish privacy statement
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | synchronized documentation between development and...
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commit | commitdiff | tree |
| 2009-10-27 |
jprocter | fix null pointer exception in redraw for short sequence...
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commit | commitdiff | tree |
| 2009-10-14 |
jprocter | quick fix for nullpointer in column selection when...
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commit | commitdiff | tree |
| 2009-10-14 |
jprocter | fix from acresso for black bg in inner panel
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | fix for pfam files with empty annotation or sequence...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | prototype Java log window and sticky configuration
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | desktop window scaled to current window geometry, prototype...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | prompt user to enable usage stats
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | added preferences for usage stats, questionnaire check...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | use Pdb database source for fetching and warn user...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | safer OOM handling when importing from XML
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | enact on a boolean configuration option, prompting...
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | fix potential race condition
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commit | commitdiff | tree |
| 2009-10-13 |
jprocter | documented privacy settings, versioncheck controlled...
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commit | commitdiff | tree |
| 2009-10-12 |
jprocter | ensure id string doesn't get set to the empty string...
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commit | commitdiff | tree |
| 2009-10-05 |
jprocter | immediately show memory usage
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commit | commitdiff | tree |
| 2009-09-22 |
jprocter | allow the display character below a graph to be explicitly...
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commit | commitdiff | tree |
| 2009-09-10 |
jprocter | fix null pointer exception when using blosum colourscheme
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commit | commitdiff | tree |
| 2009-09-03 |
jprocter | allow middle-button drag to change height of annotation...
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commit | commitdiff | tree |
| 2009-08-25 |
jprocter | jga browser string: java/version (arch; os version)
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commit | commitdiff | tree |
| 2009-08-24 |
jprocter | modified JGA module to report java+version as user...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | 1.1 compatibility
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | render sequence logo over consensus histogram
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | single-click highlights, double click selectes th associated...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | group consensus/conservation calculated from start...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | viewport setting for displaying sequence logos
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | reversed order of addition of group consensus and conservation
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | prototype make groups from selection function and shift...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | prototype make groups from selection function
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | new sortbyPID for specific start/end region
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | race condition null pointer bugfix
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | bugfix
|
commit | commitdiff | tree |
| 2009-08-21 |
jprocter | todo for 2.5
|
commit | commitdiff | tree |
| 2009-08-21 |
jprocter | null pointer exception bug fix
|
commit | commitdiff | tree |
| 2009-08-21 |
jprocter | commented debug lines indicating calculation progress
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | start/stop for per-group consensus calculation
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | store symbol profile and extract it for display
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | pir format ambiguity and todo regarding 'format override...
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | basic implementation of profile display and todos
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | todo
|
commit | commitdiff | tree |
| 2009-08-21 |
jprocter | routines for creating groups over an alignment
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commit | commitdiff | tree |
| 2009-08-21 |
jprocter | asparagine is polar but not charged
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commit | commitdiff | tree |
| 2009-08-03 |
jprocter | fix feature creation for selected region beyond end...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | explicitly grab all permissions for application execution...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | update annotation when group state is changed
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | show group annotation menu entries
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | colour by label prototype flag
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | catch null pointer exception in headless context
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | get consensus sequence and set ignore gaps flag for...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | annotation update method synchronises group annotation
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | headless warning messages, prototype group annotation...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | refactored conservation thread, added showgroupannotation...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | conservation thread refactored from AlignViewport
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | feature colour by label flag/style
|
commit | commitdiff | tree |
| 2009-07-24 |
jprocter | headless test
|
commit | commitdiff | tree |
| 2009-07-24 |
jprocter | todo
|
commit | commitdiff | tree |
| 2009-07-24 |
jprocter | implement new insert annotation row method and ensure...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | insert annotation at specific position
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | optional sequencegroup ref for annotation row
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | sequence groups carry their own conservation and consensus...
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commit | commitdiff | tree |
| 2009-07-24 |
jprocter | complete alignment annotation row procedure
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | ensure annotation row height is honoured for new VAMSAS...
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | all alignment sequences associated with a dataset sequence...
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | can use whitespace, comma or semicolon to separate IDs
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | fix to cope with EMBL records containing a CDS fragment...
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commit | commitdiff | tree |
| 2009-06-24 |
jprocter | take the average of the three consecutive codon sites...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | implementation error warning todo
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | debug and cyclefix for dbrefs with embedded sequences
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | javadoc and datastoreitem registry support for binding...
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | more efficient synchronized methods
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commit | commitdiff | tree |
| 2009-06-19 |
jprocter | bugfix mapped reference transfer and made picr ID retrieval...
|
commit | commitdiff | tree |
| 2009-06-19 |
jprocter | selection handler and sender bugfix
|
commit | commitdiff | tree |
| 2009-06-19 |
jprocter | todo
|
commit | commitdiff | tree |
| 2009-06-19 |
jprocter | selections sent when mouse is released (drags on ID...
|
commit | commitdiff | tree |
| 2009-06-19 |
jprocter | progress bars (still need to be threaded properly)...
|
commit | commitdiff | tree |
| 2009-06-19 |
jprocter | smoother scroll-to-position action
|
commit | commitdiff | tree |
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