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JAL-2275 release notes
2016-08-29
Jim Procter
JAL-2154 Optional message parameter for assertDatasetNormalised
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2016-08-29
Jim Procter
JAL-2154 new assertDatasetIsNormalised to trivially...
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2016-08-29
Jim Procter
JAL-2154 additional test that removing a duplicate...
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2016-08-26
Jim Procter
JAL-2154 patch regression on DbRefFetcher due to PDB...
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2016-08-26
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into merge...
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2016-08-26
Jim Procter
JAL-2106 fix (last one!) remove the Sequence.sourceDBRef...
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2016-08-26
Jim Procter
JAL-2154 ENSEMBL and Uniprot tests
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2016-08-26
Jim Procter
JAL-2154 report any db fetch failures as a fail at end
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2016-08-26
Jim Procter
JAL-2154 ensure pass increments actually result in...
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2016-08-26
Jim Procter
JAL-2154 catch and report a failures when xrefed project...
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2016-08-26
Jim Procter
JAL-2154 check that xref is a coding xref before adding...
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2016-08-26
Jim Procter
JAL-2154 don’t add any remaining xrefed sequences of...
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2016-08-26
Jim Procter
JAL-2154 drop PDB from Protein db list to remove from...
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2016-08-26
Jim Procter
JAL-2154 Defer failing cross-ref combinations that...
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2016-08-26
Jim Procter
JAL-2154 check that CDS panel is only nucleotide, and...
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2016-08-25
Jim Procter
JAL-2106 JAL-2154 fix test for additional reference...
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2016-08-25
Jim Procter
JAL-2106 JAL-2154 cross-refs from Ensembl should verify...
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2016-08-25
Jim Procter
JAL-2106 tighten DBRefEntry primary seq test for PDB
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2016-08-25
Jim Procter
JAL-2154 JAL-2106 transfer primary refs to CDS for...
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2016-08-25
Jim Procter
JAL-2154 copy and paste error
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2016-08-25
Jim Procter
Merge branch 'trailm' into trial_fixMakeCDSDBRefPropagation
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2016-08-25
Jim Procter
Merge branch 'refactor/JAL-2106_sourceDbRef_revision...
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2016-08-25
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
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2016-08-25
Jim Procter
Merge branch 'develop' into refactor/JAL-2106_sourceDbRef_re...
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2016-08-24
Jim Procter
JAL-2106 FIXME for test failure
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2016-08-24
Jim Procter
JAL-2106 TODO - verify Embl primary refs get added
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2016-08-24
Jim Procter
JAL-2106 tidy up and comments for DBRefFetcher
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2016-08-24
Jim Procter
JAL-2106 javadoc for sifts mapping method
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2016-08-24
Jim Procter
JAL-2106 prevent SIFTS mappings for sequences that...
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2016-08-24
Jim Procter
JAL-2106 removed setSourceDBRef, refactor getSourceDBRef...
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2016-08-24
Jim Procter
JAL-2106 stricter check for 1:1 mapping (same numbering...
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2016-08-24
Jim Procter
JAL-2106 rejig test to minimally verify patch that...
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2016-08-24
Jim Procter
JAL-2106 formatting
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2016-08-24
Jim Procter
JAL-2106 DBRefEntry.isPrimary() minimal test & implementation
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2016-08-24
Jim Procter
JAL-2106 convenience method to find all dbsource names...
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2016-08-23
Jim Procter
JAL-2154 updated testMakeCDSAlignment for expected...
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2016-08-23
Jim Procter
JAL-2154 propagate from contig to CDS after constructing...
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2016-08-23
Jim Procter
JAL-2154 should only add mappings between dataset sequences
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2016-08-23
Jim Procter
JAL-2154 - only copy DBRef from contig to new CDS sequence...
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2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
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2016-08-22
Jim Procter
JAL-2154 - rejig test pass code for breadth-first ...
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2016-08-22
Jim Procter
JAL-2154 verify recovered xref sequence not already...
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2016-08-22
Jim Procter
JAL-2154 regression warning - should never recover...
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2016-08-22
Jim Procter
JAL-2154 always check dataset sequence for sequence...
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2016-08-22
Jim Procter
JAL-2154 patch verifyAlignment so it fails for duplicate...
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2016-08-22
Jim Procter
JAL-2154 tidy assert messages and fix test to verify...
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2016-08-22
Jim Procter
JAL-2154 test that verifyAlignment fails for duplicate...
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2016-08-19
Jim Procter
JAL-2154 - possible patch .. but leads to new stringify...
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2016-08-19
Jim Procter
JAL-2154 major rejigging of test looping again
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2016-08-19
Jim Procter
JAL-2154 disable DAS sources for Jalview2XML tests
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2016-08-19
Jim Procter
JAL-2154 fix looping structure so for a particular...
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2016-08-19
Jim Procter
JAL-2154 drop unused hashes
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2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
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2016-08-19
Jim Procter
JAL-2154 reorder the dataset sequences according to...
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2016-08-19
Jim Procter
JAL-2154 belt-and-braces patch:
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2016-08-19
Jim Procter
JAL-2154 verify mapping’s sequenceI ref has been resolved...
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2016-08-19
Jim Procter
JAL-2154 use right reference string for recovering...
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2016-08-19
Jim Procter
JAL-2154 refactor setSequenceAt to replaceSequenceAt...
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2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
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2016-08-16
Jim Procter
JAL-2154 make sure any new sequences via DBRefEntry...
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2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
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2016-08-16
Jim Procter
JAL-2154 always resolve dataset sequences when creating...
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2016-08-16
Jim Procter
JAL-2154 [test] verify reference integrity for alignment...
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2016-08-16
Jim Procter
JAL-2154 formatting
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2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
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2016-08-16
Jim Procter
JAL-2154 xref test harness - test fails if there are...
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2016-08-13
Jim Procter
JAL-2154 refactor CrossRef UI code to its own class
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2016-08-13
Jim Procter
JAL-2154 check if the desktop is constructed before...
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2016-08-13
Jim Procter
JAL-2154 ignore all but the primary source resolved...
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2016-08-13
Jim Procter
JAL-2154 make sure we wait for constructor thread to...
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2016-08-11
Jim Procter
JAL-2154 clear the desktop before every 2xml test
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2016-08-11
Jim Procter
JAL-2154 jalview.gui.SequenceFetcher.fetchAndShow(db...
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2016-08-11
Jim Procter
JAL-2154 JAL-1993 relocate show dbchooser action out...
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2016-08-11
Jim Procter
JAL-2154 refactor setup/teardown from Jalview2xml for...
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2016-08-09
Jim Procter
JAL-2154 test for CDS->protein map
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2016-08-07
Jim Procter
JAL-2068 add the worker to the currently displayed...
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2016-08-07
Jim Procter
JAL-2154 add in missing class for createDatasetAlignment...
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2016-08-04
Jim Procter
JAL-2154 make sure codon mappings between sequences...
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2016-08-04
Jim Procter
JAL-2154 todo
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2016-08-04
Jim Procter
JAL-2154 use convenience method
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2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEntry...
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2016-08-04
Jim Procter
JAL-2110 comment on failing test (consider skipping...
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2016-08-04
Jim Procter
JAL-2154 test for CDS->protein map
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2016-08-04
Jim Procter
JAL-2046 stack trace for implementation warning
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2016-08-02
Jim Procter
JAL-2046 additional logic to suppress spurious implementatio...
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2016-08-02
Jim Procter
Merge branch 'efficiency/JAL-2034_JAL-1421' into develop
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2016-08-02
Jim Procter
JAL-2034 show greyed out image during overview update
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-01
Jim Procter
JAL-2164 TODO: make test pass for JMOL_PARSER
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2016-08-01
Jim Procter
JAL-2164 JAL-1919 JAL-1270 use structure import settings...
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2016-08-01
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-08-01
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into develop
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-2164 prevent jalview news from opening
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2016-08-01
Jim Procter
JAL-2164 clear the desktop before testStoreAndRecoverExpande...
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
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2016-07-29
Jim Procter
JAL-1772 JAL-2164 make expanded view save/restore test...
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