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patch for npe that occurs for importing Jalview projects where group conservation...
2010-03-26
jprocter
indicate which registry timed out.
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2010-03-26
jprocter
more efficient group URL generation.
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2010-03-22
jprocter
only do scaletofit for annotation labels
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2010-03-22
jprocter
ensure that all bits of annotation panel (slider, annotation...
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2010-03-22
jprocter
note to callers of adjustPanelHeight
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2010-03-22
jprocter
todo and sensible default setting of min/max for histograms...
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2010-03-22
jprocter
See note in Mantis bug #55537 : inconsistency between...
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2010-03-18
jprocter
disabled simple blast parser for 2.4.1 release
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2010-03-17
jprocter
simple query anchored blast report parser (shh!)
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2010-03-17
jprocter
simple query anchored blast report parser (shh!)
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2010-03-12
jprocter
1.1 compatibility
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2010-03-11
jprocter
finer column label format control and new 'scale label...
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2010-03-11
jprocter
documented new ROWPROPERTIES keyword.
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2010-03-11
jprocter
warning for unresolvable database source strings (or...
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2010-03-11
jprocter
feature settings type popup menu
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2010-03-11
jprocter
group links menu documentation
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2010-03-11
jprocter
finer column label format control and new 'scale label...
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2010-03-11
jprocter
new ROWPROPERTIES statement for setting an individual...
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2010-03-11
jprocter
pass any warning messages to StdErr - also todo to...
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2010-03-11
jprocter
raise a warning if column annotation gets truncated.
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2010-03-11
jprocter
individual label format settings for each annotation...
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2010-02-10
jprocter
todos re adding groupUrl menu item code
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2010-02-10
jprocter
das feature fetch followed by png output fixed (bug...
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2010-02-10
jprocter
only need to remove progress bar if fetch wasn't cancelled...
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2010-02-10
jprocter
commented out enfin/envision2 sequence submission URL...
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2010-02-10
jprocter
allow das fetch to be blocking or non-blocking (bug...
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2010-02-10
jprocter
progress bar hashtable entry was not being removed...
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2010-02-09
jprocter
groupURL link prototype
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2010-02-09
jprocter
groupURL link preference variables
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2010-02-09
jprocter
todo
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2010-02-09
jprocter
token replacement engine for generation of urls for...
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2010-02-09
jprocter
qsort objects on integers
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2010-01-28
jprocter
quick fix for very broken checkin - see Mantis bug...
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2010-01-28
jprocter
todo for bug #0058199
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2010-01-28
jprocter
more rigorous annotation row content check to limit...
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2009-11-23
jprocter
initialise current and defaultAlignFrame and debug...
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2009-11-13
jprocter
make fileparse errors easier to debug by dumping file...
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2009-11-11
jprocter
additional instructions and use of -jar for launching
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2009-11-09
jprocter
more spin on GA prompt
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2009-11-09
jprocter
no Vector(Vector) copy constructor in 1.2
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2009-11-09
jprocter
user friendly GA and privacy statement
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2009-11-06
jprocter
only append score if it is not NaN
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2009-11-06
jprocter
properly import column selection from message
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2009-11-06
jprocter
potential null pointer fix
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2009-11-06
jprocter
setting and merging selected columns from another selection...
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2009-11-06
jprocter
better formed generic select residue X expression
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2009-11-04
jprocter
empty row removed
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2009-11-04
jprocter
removed duplicate descriptions, documented nodisplay...
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2009-11-03
jprocter
updated dependencies and versions for example jnlp
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2009-11-03
jprocter
pasted file contents should never be added to the recent...
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2009-11-02
jprocter
gracefully cope with non-standard nucleotide or amino...
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2009-11-02
jprocter
gracefully cope with non-standard nucleotide or amino...
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2009-10-30
jprocter
na pdb: highlight any part of a residue, not just the...
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2009-10-30
jprocter
na pdb: recognise NA residue names
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2009-10-30
jprocter
na pdb: detect P backbone
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2009-10-29
jprocter
add JGoogleAnalytics webstart resource
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2009-10-27
jprocter
todo
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2009-10-27
jprocter
typo
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2009-10-27
jprocter
finish privacy statement
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2009-10-27
jprocter
synchronized documentation between development and...
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2009-10-27
jprocter
fix null pointer exception in redraw for short sequence...
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2009-10-14
jprocter
quick fix for nullpointer in column selection when...
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2009-10-14
jprocter
fix from acresso for black bg in inner panel
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2009-10-13
jprocter
fix for pfam files with empty annotation or sequence...
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2009-10-13
jprocter
prototype Java log window and sticky configuration
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2009-10-13
jprocter
desktop window scaled to current window geometry, prototype...
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2009-10-13
jprocter
prompt user to enable usage stats
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2009-10-13
jprocter
added preferences for usage stats, questionnaire check...
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2009-10-13
jprocter
use Pdb database source for fetching and warn user...
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2009-10-13
jprocter
safer OOM handling when importing from XML
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2009-10-13
jprocter
enact on a boolean configuration option, prompting...
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2009-10-13
jprocter
fix potential race condition
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2009-10-13
jprocter
documented privacy settings, versioncheck controlled...
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2009-10-12
jprocter
ensure id string doesn't get set to the empty string...
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2009-10-05
jprocter
immediately show memory usage
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2009-09-22
jprocter
allow the display character below a graph to be explicitly...
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2009-09-10
jprocter
fix null pointer exception when using blosum colourscheme
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2009-09-03
jprocter
allow middle-button drag to change height of annotation...
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2009-08-25
jprocter
jga browser string: java/version (arch; os version)
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2009-08-24
jprocter
modified JGA module to report java+version as user...
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2009-08-21
jprocter
1.1 compatibility
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2009-08-21
jprocter
render sequence logo over consensus histogram
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2009-08-21
jprocter
single-click highlights, double click selectes th associated...
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2009-08-21
jprocter
group consensus/conservation calculated from start...
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2009-08-21
jprocter
viewport setting for displaying sequence logos
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2009-08-21
jprocter
reversed order of addition of group consensus and conservation
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2009-08-21
jprocter
prototype make groups from selection function and shift...
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2009-08-21
jprocter
prototype make groups from selection function
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2009-08-21
jprocter
new sortbyPID for specific start/end region
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2009-08-21
jprocter
race condition null pointer bugfix
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2009-08-21
jprocter
bugfix
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2009-08-21
jprocter
todo for 2.5
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2009-08-21
jprocter
null pointer exception bug fix
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2009-08-21
jprocter
commented debug lines indicating calculation progress
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2009-08-21
jprocter
start/stop for per-group consensus calculation
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2009-08-21
jprocter
store symbol profile and extract it for display
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2009-08-21
jprocter
pir format ambiguity and todo regarding 'format override...
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2009-08-21
jprocter
basic implementation of profile display and todos
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2009-08-21
jprocter
todo
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2009-08-21
jprocter
routines for creating groups over an alignment
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