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Merge branch 'develop' into bug/JAL-2154projectMappings
2016-08-25
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
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2016-08-23
Jim Procter
Merge branch 'develop' into bug/JAL-2154projectMappings
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2016-08-22
Jim Procter
JAL-2154 - rejig test pass code for breadth-first ...
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2016-08-22
Jim Procter
JAL-2154 verify recovered xref sequence not already...
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2016-08-22
Jim Procter
JAL-2154 regression warning - should never recover...
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2016-08-22
Jim Procter
JAL-2154 always check dataset sequence for sequence...
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2016-08-22
Jim Procter
JAL-2154 patch verifyAlignment so it fails for duplicate...
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2016-08-22
Jim Procter
JAL-2154 tidy assert messages and fix test to verify...
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2016-08-22
Jim Procter
JAL-2154 test that verifyAlignment fails for duplicate...
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2016-08-19
Jim Procter
JAL-2154 - possible patch .. but leads to new stringify...
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2016-08-19
Jim Procter
JAL-2154 major rejigging of test looping again
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2016-08-19
Jim Procter
JAL-2154 disable DAS sources for Jalview2XML tests
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2016-08-19
Jim Procter
JAL-2154 fix looping structure so for a particular...
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2016-08-19
Jim Procter
JAL-2154 drop unused hashes
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2016-08-19
Jim Procter
JAL-2154 testNG like assertAlignmentDatasetRefs static...
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2016-08-19
Jim Procter
JAL-2154 reorder the dataset sequences according to...
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2016-08-19
Jim Procter
JAL-2154 belt-and-braces patch:
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2016-08-19
Jim Procter
JAL-2154 verify mapping’s sequenceI ref has been resolved...
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2016-08-19
Jim Procter
JAL-2154 use right reference string for recovering...
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2016-08-19
Jim Procter
JAL-2154 refactor setSequenceAt to replaceSequenceAt...
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2016-08-16
Jim Procter
JAL-2154 verify sequenceI/dataset refs for codonmappings
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2016-08-16
Jim Procter
JAL-2154 make sure any new sequences via DBRefEntry...
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2016-08-16
Jim Procter
JAL-2154 check alignment isn’t null before validating
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2016-08-16
Jim Procter
JAL-2154 always resolve dataset sequences when creating...
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2016-08-16
Jim Procter
JAL-2154 [test] verify reference integrity for alignment...
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2016-08-16
Jim Procter
JAL-2154 formatting
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2016-08-16
Jim Procter
JAL-2154 new assert to check reference integrity for...
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2016-08-16
Jim Procter
JAL-2154 xref test harness - test fails if there are...
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2016-08-13
Jim Procter
JAL-2154 refactor CrossRef UI code to its own class
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2016-08-13
Jim Procter
JAL-2154 check if the desktop is constructed before...
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2016-08-13
Jim Procter
JAL-2154 ignore all but the primary source resolved...
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2016-08-13
Jim Procter
JAL-2154 make sure we wait for constructor thread to...
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2016-08-11
Jim Procter
JAL-2154 clear the desktop before every 2xml test
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2016-08-11
Jim Procter
JAL-2154 jalview.gui.SequenceFetcher.fetchAndShow(db...
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2016-08-11
Jim Procter
JAL-2154 JAL-1993 relocate show dbchooser action out...
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2016-08-11
Jim Procter
JAL-2154 refactor setup/teardown from Jalview2xml for...
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2016-08-07
Jim Procter
JAL-2154 add in missing class for createDatasetAlignment...
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2016-08-04
Jim Procter
JAL-2154 make sure codon mappings between sequences...
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2016-08-04
Jim Procter
JAL-2154 todo
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2016-08-04
Jim Procter
JAL-2154 use convenience method
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2016-08-04
Jim Procter
JAL-2154 make sure all sequences referenced via DBRefEntry...
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2016-08-04
Jim Procter
JAL-2110 comment on failing test (consider skipping...
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2016-08-04
Jim Procter
JAL-2154 test for CDS->protein map
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2016-08-04
Jim Procter
JAL-2046 stack trace for implementation warning
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2016-08-02
Jim Procter
JAL-2046 additional logic to suppress spurious implementatio...
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2016-08-02
Jim Procter
Merge branch 'efficiency/JAL-2034_JAL-1421' into develop
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2016-08-02
Jim Procter
JAL-2034 show greyed out image during overview update
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-02
Jim Procter
JAL-2068 reinstated false return value for notifyWorking
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2016-08-02
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-08-01
Jim Procter
JAL-2164 TODO: make test pass for JMOL_PARSER
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2016-08-01
Jim Procter
JAL-2164 JAL-1919 JAL-1270 use structure import settings...
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2016-08-01
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-08-01
Jim Procter
Merge branch 'bug/JAL-2154projectMappings' into develop
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-2164 prevent jalview news from opening
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2016-08-01
Jim Procter
JAL-2164 clear the desktop before testStoreAndRecoverExpande...
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2016-08-01
Jim Procter
Merge branch 'task/JAL-2164_mcviewforoldjalviewprojects...
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2016-08-01
Jim Procter
JAL-1772 make sure we actually return reference to...
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2016-07-29
Jim Procter
JAL-1772 JAL-2164 make expanded view save/restore test...
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2016-07-29
Jim Procter
JAL-2164 JAL-1772 explodeViews can be static, so make...
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2016-07-29
Jim Procter
JAL-2164 revert tests depending on import of legacy...
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2016-07-29
Jim Procter
JAL-2154 disable visual delay only after completed...
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2016-07-29
Jim Procter
JAL-2154 register any new dataset codon frames only...
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2016-07-29
Jim Procter
JAL-2154 only include mappings in dbref/alcodon in...
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2016-07-27
Jim Procter
JAL-2154 toString for forward references
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2016-07-27
Jim Procter
Merge branch 'patch/JAL-2156_JAL-2163_saveSplitFrameFromSave...
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2016-07-27
Jim Procter
JAL-2163 set title for the alignframe from restored...
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2016-07-27
Jim Procter
JAL-2156 resolve and add complementary views for saveAlignment
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2016-07-27
Jim Procter
JAL-2156 refactor saveState & saveAlignment to common...
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2016-07-27
Jim Procter
JAL-2156 getter for AlignFrame(s) held in a splitframe
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2016-07-26
Jim Procter
JAL-2157 todo: verify parser/file format enums and...
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2016-07-24
Jim Procter
JAL-2154 formatting
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2016-07-24
Jim Procter
JAL-2154 keep track of incomplete sequences and report...
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2016-07-24
Jim Procter
JAL-2154 systematic pattern for defining/resolving...
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2016-07-23
Jim Procter
JAL-2154 patch the hack (Jalview2XML tests pass)
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2016-07-21
Jim Procter
Merge branch 'apifix/JAL-1926_JAL-2106' into develop
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 fix name for flag controlling addition...
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 don’t use PDB database constant as...
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 use enum for ‘DEFAULT_STRUCTURE_FORMAT...
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2016-07-20
Jim Procter
JAL-1926 JAL-2106 remove startRes/endRes fields - not...
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2016-07-19
Jim Procter
Merge branch 'develop' into efficiency/JAL-2034_JAL...
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2016-07-18
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2016-07-18
Jim Procter
JAL-666 patch JAL-1947 in applet where overview is...
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2016-07-18
Jim Procter
JAL-2068 clearer instructions on how to use script...
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2016-07-18
Jim Procter
JAL-2068 clarify comments
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2016-07-18
Jim Procter
JAL-2068 scale annotation display character to width...
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2016-07-18
Jim Procter
JAL-2121 cleanup TODO
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2016-07-18
Jim Procter
JAL-2110 JAL-2145 fix out of date test for 2baee069f9edaef28...
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2016-07-18
Jim Procter
Merge branch 'features/JAL-2068groovyAnnotationWorker...
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2016-07-18
Jim Procter
JAL-2145 improvement: ensure conservation calculation...
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2016-07-18
Jim Procter
JAL-2145 documentation of getWidth()
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2016-07-18
Jim Procter
JAL-2145 JAL-1551 formatting
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2016-07-18
Jim Procter
JAL-2145 fix: build alignments before building AlignFrame...
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2016-07-14
Jim Procter
fix for JAL-2147
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2016-07-14
Jim Procter
JAL-2147 findMappingsBetweenSequenceAndOthers for scoping...
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2016-07-14
Jim Procter
JAL-1115 change implementation to avoid possibility...
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2016-07-14
Jim Procter
JAL-1270 test coverage TODO Alignment.append(AlignmentI)
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2016-07-14
Jim Procter
JAL-2110 JAL-2147 JAL-2145 - pad CDS alignment reconstructed...
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2016-07-13
Jim Procter
Merge branch 'features/JAL-2110_crossRefDuplications...
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