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2015-07-15	tcofoegbu	JAL-1553 reviewed & updated docs	commit \| commitdiff \| tree
2015-07-15	tcofoegbu	JAL-1667 JAL-1668 updated reviewed and updated docs	commit \| commitdiff \| tree
2015-07-15	tcofoegbu	JAL-1788 updated docs	commit \| commitdiff \| tree
2015-07-15	tcofoegbu	JAL-1769 updated test data	commit \| commitdiff \| tree
2015-07-13	tcofoegbu	JAL-1788 added help documentation for biojson	commit \| commitdiff \| tree
2015-07-09	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-07-09	tcofoegbu	JAL-1769 increased timeout period for eps generation	commit \| commitdiff \| tree
2015-07-09	tcofoegbu	JAL-1806 bug fix to loop through the entire data file...	commit \| commitdiff \| tree
2015-07-09	tcofoegbu	JAL-1769 added test for commandline input operations	commit \| commitdiff \| tree
2015-07-08	tcofoegbu	JAL-1641 biojson documentation with docson	commit \| commitdiff \| tree
2015-07-07	tcofoegbu	JAL-1769 fixed output to jalview (.jpv) file in headless...	commit \| commitdiff \| tree
2015-07-07	tcofoegbu	JAL-1805 test envirionment separation	commit \| commitdiff \| tree
2015-07-06	tcofoegbu	Merge branch 'features/1769_headless-mode-test' into...	commit \| commitdiff \| tree
2015-07-06	tcofoegbu	JAL-1641 added json schema for jalview JSON model,...	commit \| commitdiff \| tree
2015-07-06	tcofoegbu	JAL-1769 fixed headless execution mode and created...	commit \| commitdiff \| tree
2015-07-02	tcofoegbu	Merge branch 'bug/JAL-1443_loading-empty-file' into...	commit \| commitdiff \| tree
2015-07-02	tcofoegbu	JAL-1443 data validation for empty content before loading...	commit \| commitdiff \| tree
2015-07-01	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-07-01	tcofoegbu	house keeping	commit \| commitdiff \| tree
2015-06-30	tcofoegbu	Merge branch 'features/JAL-1641_JSON-tests-and-docs...	commit \| commitdiff \| tree
2015-06-30	tcofoegbu	JAL-1641 round trip test/refactoring	commit \| commitdiff \| tree
2015-06-26	tcofoegbu	JAL-1641 fixed broken functionalities after refactor	commit \| commitdiff \| tree
2015-06-26	tcofoegbu	merge	commit \| commitdiff \| tree
2015-06-26	tcofoegbu	JAL-1780 improvement to ensure export settings dialog...	commit \| commitdiff \| tree
2015-06-19	tcofoegbu	JAL-1270 test suits import order refactor	commit \| commitdiff \| tree
2015-06-19	tcofoegbu	JAL-1270 JUnit to TestNG refactoring	commit \| commitdiff \| tree
2015-06-17	tcofoegbu	JAL-1780 more support for export setting for flatfile...	commit \| commitdiff \| tree
2015-06-17	tcofoegbu	JAL-1780 Export settings for flatfile output	commit \| commitdiff \| tree
2015-06-15	tcofoegbu	JAL-1641 clean up	commit \| commitdiff \| tree
2015-06-15	tcofoegbu	JAL-1641 docs for ComplexAlignFile interface	commit \| commitdiff \| tree
2015-06-15	tcofoegbu	clean up	commit \| commitdiff \| tree
2015-06-12	tcofoegbu	merge	commit \| commitdiff \| tree
2015-06-12	tcofoegbu	JAL-1627 removed extra spaces at end of tooltip	commit \| commitdiff \| tree
2015-06-12	tcofoegbu	JAL-1641 refactor	commit \| commitdiff \| tree
2015-06-10	tcofoegbu	updated build.xml	commit \| commitdiff \| tree
2015-06-10	tcofoegbu	merge	commit \| commitdiff \| tree
2015-06-10	tcofoegbu	JAL-1641 updated applet version	commit \| commitdiff \| tree
2015-06-09	tcofoegbu	merge commit	commit \| commitdiff \| tree
2015-06-09	tcofoegbu	JAL-1488 bug-fix for incorrect start/end position in...	commit \| commitdiff \| tree
2015-06-05	tcofoegbu	Merge branch 'bug/JAL-1760_restore-hidden-seqs' into...	commit \| commitdiff \| tree
2015-06-05	tcofoegbu	JAL-1760 JAL-1641 Serialisation of Hidden Seqs and...	commit \| commitdiff \| tree
2015-06-04	tcofoegbu	JAL-1641 added some JSON libraries to appletlib	commit \| commitdiff \| tree
2015-06-04	tcofoegbu	clean up	commit \| commitdiff \| tree
2015-06-04	tcofoegbu	JAL-1756 fix failed test as a result of runing the...	commit \| commitdiff \| tree
2015-06-04	tcofoegbu	Merge branch 'features/JAL-1641_JSON-extension' into...	commit \| commitdiff \| tree
2015-06-04	tcofoegbu	JAL-1756 bug-fix	commit \| commitdiff \| tree
2015-06-04	tcofoegbu	JAL-1641 updated json schema to make it more generic...	commit \| commitdiff \| tree
2015-06-02	tcofoegbu	fixed bug in build.xml	commit \| commitdiff \| tree
2015-06-02	tcofoegbu	Merge branch 'features/JAL-1641_JSON-extension' into...	commit \| commitdiff \| tree
2015-06-02	tcofoegbu	JAL-1641 updated build.xml	commit \| commitdiff \| tree
2015-06-02	tcofoegbu	JAL-1641 updated examples/applets.html	commit \| commitdiff \| tree
2015-06-02	tcofoegbu	Merge branch 'features/JAL-1641_JSON-extension' into...	commit \| commitdiff \| tree
2015-06-02	tcofoegbu	JAL-1641 applet build fix	commit \| commitdiff \| tree
2015-06-01	tcofoegbu	Merge branch 'features/JAL-1641_JSON-extension' into...	commit \| commitdiff \| tree
2015-06-01	tcofoegbu	JAL-1641 remove all refs/imports from gui package	commit \| commitdiff \| tree
2015-06-01	tcofoegbu	Merge branch 'bug/JAL-1703_hint_select_by_annot' into...	commit \| commitdiff \| tree
2015-06-01	tcofoegbu	JAL-1703 added tooltip hints to components of the Select...	commit \| commitdiff \| tree
2015-06-01	tcofoegbu	Merge branch 'bug/JAL-1734_misleading-progress-bar...	commit \| commitdiff \| tree
2015-06-01	tcofoegbu	JAL-1734 updated progress bar messages	commit \| commitdiff \| tree
2015-05-29	tcofoegbu	Merge branch 'develop' of https://source.jalview.org...	commit \| commitdiff \| tree
2015-05-29	tcofoegbu	JAL-1748 house keeping	commit \| commitdiff \| tree
2015-05-29	tcofoegbu	Merge branch 'bug/JAL-1748_extend-pdb-query-opt' into...	commit \| commitdiff \| tree
2015-05-29	tcofoegbu	JAL-1748 and employ preprocessing routine when return...	commit \| commitdiff \| tree
2015-05-29	tcofoegbu	validate PDB selections on mouse release event	commit \| commitdiff \| tree
2015-05-28	tcofoegbu	JAL-1700 made PDB service error mechanism more user...	commit \| commitdiff \| tree
2015-05-28	tcofoegbu	Merge branch 'bug/JAL-1751_make-table-uneditable' into...	commit \| commitdiff \| tree
2015-05-28	tcofoegbu	JAL-1751 provided method to overide isCellEditable...	commit \| commitdiff \| tree
2015-05-28	tcofoegbu	Merge branch 'bug/JAL-1749_reinstate-rna-viewing' into...	commit \| commitdiff \| tree
2015-05-28	tcofoegbu	JAL-1749 reinstated the ability to view RNA structures	commit \| commitdiff \| tree
2015-05-28	tcofoegbu	JAL-1740 minor house keeping	commit \| commitdiff \| tree
2015-05-27	tcofoegbu	Removed redundant classes and dependencies pulled in...	commit \| commitdiff \| tree
2015-05-27	tcofoegbu	Merge branch 'features/JAL-1740_Decoup-BioJS' into...	commit \| commitdiff \| tree
2015-05-27	tcofoegbu	JAL-1740 updated synch codes to use a git repo rather...	commit \| commitdiff \| tree
2015-05-26	tcofoegbu	JAL-1627 bug fix to remove wierd space in Sequence...	commit \| commitdiff \| tree
2015-05-25	tcofoegbu	build fix	commit \| commitdiff \| tree
2015-05-22	tcofoegbu	Merge branch 'features/JAL-1745_PDB-redownload' into...	commit \| commitdiff \| tree
2015-05-22	tcofoegbu	JAL-1745, JAL-1717 improvement to ensure cached PDB...	commit \| commitdiff \| tree
2015-05-22	tcofoegbu	Merge branch 'features/JAL-1745_PDB-redownload' into...	commit \| commitdiff \| tree
2015-05-22	tcofoegbu	JAL-1745 improvement to retreive already downloaded...	commit \| commitdiff \| tree
2015-05-21	tcofoegbu	JAL-1740 implemented auto-update of BioJsMSA, introduced...	commit \| commitdiff \| tree
2015-05-20	tcofoegbu	Merge branch 'features/JAL-1739_JSON-versioning' into...	commit \| commitdiff \| tree
2015-05-20	tcofoegbu	JAL-1739 added svid - serial version id to hold version...	commit \| commitdiff \| tree
2015-05-20	tcofoegbu	Merge branch 'features/JAL-1541_BioJsMSA' into develop	commit \| commitdiff \| tree
2015-05-20	tcofoegbu	JAL-1541 minor code clean up, and added test for BioJsHTMLOutput	commit \| commitdiff \| tree
2015-05-19	tcofoegbu	Merge branch 'features/JAL-1541_BioJsMSA' into develop	commit \| commitdiff \| tree
2015-05-19	tcofoegbu	JAL-1641 Further refactoring of JSON export option...	commit \| commitdiff \| tree
2015-05-19	tcofoegbu	JAL-1541 Modified BioJs exporter to take advantage...	commit \| commitdiff \| tree
2015-05-13	tcofoegbu	Fixed some broken tests	commit \| commitdiff \| tree
2015-05-12	tcofoegbu	Merge branch 'features/JAL-793_Embed_data_HTML' into...	commit \| commitdiff \| tree
2015-05-12	tcofoegbu	JAL_793 implemented embeding source data in exported...	commit \| commitdiff \| tree
2015-05-12	tcofoegbu	JAL_1641 updated test -- added test for annotations	commit \| commitdiff \| tree
2015-05-12	tcofoegbu	Merge branch 'features/JAL-1641_JSON_' into develop	commit \| commitdiff \| tree
2015-05-12	tcofoegbu	JAL_1641 added unit test and minor house keeping	commit \| commitdiff \| tree
2015-05-11	tcofoegbu	Merge branch 'features/JAL-1641_JSON_' into develop	commit \| commitdiff \| tree
2015-05-11	tcofoegbu	JAL-1641 cherry-picked changes into develop compatible...	commit \| commitdiff \| tree
2015-05-01	tcofoegbu	Merge branch 'bug/JAL-1700_PDB-rest-api-error-handling...	commit \| commitdiff \| tree
2015-05-01	tcofoegbu	JAL-1700 Improved the error handling mechanism for...	commit \| commitdiff \| tree
2015-05-01	tcofoegbu	Merge branch 'bug/JAL-1726_External-integration-test_PDB...	commit \| commitdiff \| tree
2015-05-01	tcofoegbu	JAL-1726 Added external integration test for PDB Rest API	commit \| commitdiff \| tree
2015-04-30	tcofoegbu	Merge branch 'bug/JAL-1717_make-pbd-id-case_insensitive...	commit \| commitdiff \| tree
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