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JAL-2154 additional test that removing a duplicate sequence reinstates dataset refere...
2015-09-04
Jim Procter
JAL-1847 Merge branch 'thiago' into develop
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2015-09-04
Jim Procter
JAL-1847 added AUTOSUPERIMPOSE property which can be...
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2015-09-03
Jim Procter
JAL-1863 allow RNA secondary structure rows exported...
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2015-09-03
Jim Procter
JAL-961 efficiency TODO: decouple overview updates...
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2015-09-03
Jim Procter
JAL-1680 JAL-1576 JAL-1233 all conservation and consensus...
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2015-09-03
Jim Procter
JAL-1576 fix: trigger broadcast of colour change with...
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2015-09-03
Jim Procter
JAL-961 TODO use workers for calculations supporting...
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2015-09-03
Jim Procter
JAL-1551 source tidy
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2015-09-03
Jim Procter
JAL-1550 JAL-1551 formatting
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2015-09-03
Jim Procter
JAL-1233 JAL-1576 copy constructor to propagate helix...
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2015-09-02
Jim Procter
JAL-1853 add test to list for ant task
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2015-09-02
Jim Procter
JAL-535 todo: refactor logic to desktop controller...
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2015-09-02
Jim Procter
JAL-1772 non-functional test added. not doing any more...
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2015-09-01
Jim Procter
Merge branch 'bug/JAL-1853_gapchar_output' into develop
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2015-09-01
Jim Procter
JAL-1853 add test to Functional group
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2015-09-01
Jim Procter
JAL-1853 make getVisibleSeqs more memory efficient...
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2015-09-01
Jim Procter
JAL-1853 refactor clip routine from getSequenceStrings
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2015-09-01
Jim Procter
patch for JAL-1853 - use given gap character to reconstruct...
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2015-09-01
Jim Procter
JAL-1853 test origin of gapChar bug in AlignView method
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2015-09-01
Jim Procter
JAL-1853 test demonstrating bug
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2015-08-27
Jim Procter
JAL-1844 adding more missing jars - jersey, other json...
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2015-08-27
Jim Procter
fix for JAL-1844 add jersey-core,json,client-1.19 to...
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2015-08-10
Jim Procter
JAL-1645 updated final release date for version 2.9
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2015-08-10
Jim Procter
Merge branch 'release/2_9_documentation' into develop
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2015-08-10
Jim Procter
JAL-736 relocate group associated conservation symbols...
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2015-08-10
Jim Procter
JAL-736 source formatting
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2015-08-05
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2015-08-05
Jim Procter
JAL-1821 formatting
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2015-08-05
Jim Procter
JAL-1821 launch the structure view in a separate thread...
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2015-08-05
Jim Procter
JAL-1822 create dataset sequences if they aren’t already...
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2015-08-05
Jim Procter
JAL-1821 JAL-1759 make sure we wait around until the...
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2015-08-05
Jim Procter
JAL-1821 patch for completeness - first model number...
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2015-08-03
Jim Procter
JAL-1821 JAL-1759 reinstate rotation speed configuration...
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2015-08-03
Jim Procter
JAL-1821 JAL-1759 updated Jmol has different model...
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2015-08-03
Jim Procter
JAL-1821 avoid race condition when multiple structures...
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2015-07-23
Jim Procter
Merge branch 'features/JAL-1759jmolUpdate' into develop
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2015-07-23
Jim Procter
JAL-1759 formatting
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2015-07-23
Jim Procter
JAL-1759 reinstate changes from bdfde6ef989da0702cef90f03858...
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2015-07-23
Jim Procter
JAL-1759 formatting
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2015-07-23
Jim Procter
Merge branch 'develop' of http://source.jalview.org...
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2015-07-23
Jim Procter
Merge branch 'task/JAL-1794_jettyExamplesServer' into...
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2015-07-23
Jim Procter
Merge branch 'bug/JAL-1819_isNaN' into develop
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2015-07-23
Jim Procter
JAL-1819 commented out debugging message to stderr
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2015-07-23
Jim Procter
JAL-1551 JAL-1819 formatting/imports
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2015-07-23
Jim Procter
JAL-1819 use Float.isNaN() to check for NaNs!
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2015-07-22
Jim Procter
JAL-1805 add group spec to the BeforeMethod setup ...
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2015-07-22
Jim Procter
JAL-1782 added summary test report for Release_2_9_Branch...
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2015-07-21
Jim Procter
Merge branch 'ismb/2015_demo' into develop
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2015-07-16
Jim Procter
revision for JAL-1749 - ensure view 2D structure menu...
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2015-07-16
Jim Procter
fix for JAL-1776 renamed popup menu entry
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2015-06-30
Jim Procter
JAL-1682 JAL-1645 remove references to 2.8.3
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2015-06-30
Jim Procter
JAL-1645 update release history for 2.8.2b1
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2015-06-28
Jim Procter
JAL-1705 example GFF3 with network of ensembl relationships...
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2015-06-28
Jim Procter
JAl-1705 ENSEMBL cDNA type cannot be queried with peptide IDs
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2015-06-28
Jim Procter
JAL-1705 notes about retrieving feature relationships...
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2015-06-28
Jim Procter
JAL-1551 formatting
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2015-06-28
Jim Procter
JAL-1705 test that the regex correctly processes ENSEMBL...
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2015-06-28
Jim Procter
JAL-1705 a second ENSEMBL test id/sequence pair
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2015-06-28
Jim Procter
JAL-1705 javadoc to clarify requirements for regex...
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2015-06-28
Jim Procter
JAL-1705 add concrete ENSEMBL sequence fetchers
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2015-06-28
Jim Procter
JAL-1551 reorder imports
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2015-06-28
Jim Procter
JAL-1421 todo: remove java.util.Vector from jalview...
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2015-06-28
Jim Procter
JAL-1705 refactored code for dbsource reggae validator...
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2015-06-28
Jim Procter
JAL-1705 javadoc
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2015-06-28
Jim Procter
JAL-1705 renamed test for refactored class
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2015-06-28
Jim Procter
JAL-1705 concrete classes for different ENSEMBL sequence...
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2015-06-28
Jim Procter
JAL-1705 renamed SeqFetcherTest to EnsemblSeqProxyTest
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2015-06-26
Jim Procter
JAL-1705 basic client & tests for rest.ensembl.org...
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2015-06-26
Jim Procter
JAL-1705 - allow a FileParse to be constructed directly...
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2015-06-25
Jim Procter
JAL-1794 simple file server class - configured for...
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2015-06-25
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
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2015-06-25
Jim Procter
JAL-1691 avoid NPE when original split frame has been...
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2015-06-25
Jim Procter
JAL-1780 JAL-653 JAL-1892 brackets in wrong place broke...
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2015-06-25
Jim Procter
Merge branch 'develop' into features/JAL-653_JAL-1766_htslib...
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2015-06-24
Jim Procter
Merge branch 'features/JAL-1370_patchshowunconserved...
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2015-06-24
Jim Procter
JAL-1790 fix: javac.source=1.7 and javac.target=1.7...
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2015-06-24
Jim Procter
JAL-653 JAL-1780 JAL-1892 fix jalviewLite compilation
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2015-06-24
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-24
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-24
Jim Procter
JAL-1782 refactored JAL-1766 JAL-653 tests to TestNG
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2015-06-23
Jim Procter
JAL-1780 JAL-653 jim forgot to put the conditional...
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2015-06-23
Jim Procter
Merge branch 'merge/develop_JAL-1780_JAL-653_JAL-1892...
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2015-06-23
Jim Procter
JAL-1782 JAL-1780 JAL-653 JAL-1892 update patched refactored...
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2015-06-22
Jim Procter
JAL-1270 fix logic in stockholm test allowing annotation...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 JAL-1140 added RNAML example alignment...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 dropped unnecessary refs
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2015-06-22
Jim Procter
JAL-1780 JAL-653 Format/AppletFormat import and export...
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2015-06-22
Jim Procter
JAL-653 JAL-1780 reorder imports
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2015-06-19
Jim Procter
JAL-653 JAL-1780 refactor getGroups so HTMLfile/JSONfile...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-19
Jim Procter
JAL-653 JAL-1780 minimise call rate now av.hasHiddenRows...
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2015-06-19
Jim Procter
JAL-653 JAL-1780 dropped av.setHasHiddenRows() and...
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2015-06-19
Jim Procter
JAL-1780 JAL-653 organise imports
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2015-06-18
Jim Procter
JAL-653 patch broken test code - test still not passing
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2015-06-18
Jim Procter
JAL-653 JAL-1780 JAL-1543 javadoc and comment about...
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2015-06-18
Jim Procter
JAL-653 JAL-1780 javadoc for FeatureRenderer prior...
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2015-06-18
Jim Procter
JAL-1780 JAL-653 moved AlignExportSettings reference...
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2015-06-17
Jim Procter
JAL-1784 minimise data duplication, and report out...
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2015-06-17
Jim Procter
JAL-1784 refactor parse method to directly parse FileParser...
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2015-06-17
Jim Procter
Merge branch 'features/JAL-653_gffalignments' into...
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