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JAL-2629 hmmsearch # of new sequences now only displayed when specified
2019-07-10 tvaJAL-2629 hmmsearch # of new sequences now only displayed...
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2019-07-10 tvaJAL-2629 fix incorrect hmmbuild on groups behaviour
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2019-07-10 tvaJAL-2629 fix hmmsearch/jackhmmer being unable to search...
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2019-07-05 tvaJAL-2629 uniquify all hmmer command sequence outputs
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2019-07-05 tvaJAL-2629 fix file format issues preventing hmmsearch...
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2019-07-03 tvaJAL-2629 fix search scores being read in incorrectly
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2019-07-03 tvaJAL-2629 fix hmm on alignment being deleted upon running...
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2019-07-03 tvaJAL-2629 evalues and bit scores now conserved after...
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2019-07-03 tvaJAL-2629 removed empty line produced under sequence...
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2019-07-03 tvaJAL-2629 can now filter by sequence e-value or bit...
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2019-07-02 tvaJAL-2629 hmm match score colour scheme now colours...
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2019-07-02 tvaJAL-2629 add simple jackhmmer functionality
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2019-06-28 tvaJAL-2629 add ability to add background frequencies...
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2019-06-28 tvaJAL-3336 add better method of determining where data...
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2019-06-28 tvaJAL-3336 fix hmmsearch failing when parsing score table
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2019-06-28 tvaJAL-2629 another file that should have been in previous...
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2019-06-28 tvaJAL-2629 add file that should have been in previous...
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2019-06-28 tvaJAL-2629 add HMM Match Score colour scheme
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2019-06-10 tvaJAL-3297 pad gaps in alignment to ensure hmmalign runs
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2019-06-07 tvaJAL-3291 issue fixed, passing tests added
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2019-06-07 tvaJAL-3285 fix errors in tests introduced by merge
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2019-06-06 tvaJAL-3285 build Jalview XML file for current version
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2019-06-06 tvaJAL-3285 fix incorrect file paths on HMMAlign/Search...
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2019-06-06 tvaJAL-3285 add Cygwin environment path fix for Windows
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2019-06-06 tvaJAL-3285 code changes to HMMER colour schemes not included...
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2019-06-06 tvaJAL-3285 fix FileLoader failing to load HMMER file
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2019-06-05 tvaJAL-3285 method call change tin Information to match...
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2019-06-05 tvaJAL-3285 delete duplicate variables in AlignmentViewport...
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2019-06-05 tvaJAL-3285 method call change to HMMBuild not included...
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2019-06-05 tvaJAL-3285 method call change in SeqPanel to match develop
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2019-06-05 tvaJAL-3285 change method declaration in AAFrequency to...
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2019-06-05 tvaJAL-3285 changed method call on AnnotationRenderer...
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2019-06-05 tvaJAL-3285 code changes to Jalview2XML not included in...
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2019-06-05 tvaJAL-3285 add unmerged code to AlignmentAnnotation
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2019-06-05 tvaJAL-3285 method call name change to SeqPanel not included...
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2019-06-05 tvaJAL-3285 method call name change in OverviewPanel not...
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2019-06-05 tvaJAL-3285 small method call name change to AnnotationLabels
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2019-06-05 tvaJAL-3285 add unmerged code to SequenceGroup
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2019-06-05 tvaJAL-3285 small method call name change missed in ConsensusTh...
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2019-06-05 tvaJAL-3285 small code changes to ConsensusThread not...
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2019-06-05 tvaJAL-3285 small code changes to AnnotationRenderer not...
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2019-06-05 tvaJAL-3285 code changes to AnnotationLabels not included...
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2019-06-05 tvaJAL-3285 add unmerged features to AlignViewportI
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2019-06-05 tvaJAL-3285 add unmerged features to AlignViewport
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2019-06-05 tvaJAL-3285 add unmerged features into AlignmentViewport
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2019-06-05 tvaJAL-3285 add methods and small changes to StockholmFile...
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