JAL-3285 fix FileLoader failing to load HMMER file

diff --git a/src/jalview/io/FileLoader.java b/src/jalview/io/FileLoader.java
index 6ac0869..b6701a3 100755 (executable)
--- a/src/jalview/io/FileLoader.java
+++ b/src/jalview/io/FileLoader.java
@@ -443,7 +443,7 @@ public class FileLoader implements Runnable
             {
               AlignmentI alignment = viewport.getAlignment();
               SequenceI seq = alignment
-                      .getSequenceAt(alignment.getAbsoluteHeight() - 1);
+                      .getSequenceAt(alignment.getHeight() - 1);
               if (seq.hasHMMProfile())
               {
                 /*