jalview.git
2016-03-21 tcofoegbumerged features/JAL-1919_mmCIF-Support to develop
2016-03-21 tcofoegbudevelop merge features/JAL-1919_mmCIF-Support
2016-03-21 tcofoegbuJAL-2028 added improvement for preconfigured ordering...
2016-03-21 tcofoegbudevelop merge
2016-03-21 tcofoegbumerge
2016-03-21 tcofoegbumungo merge
2016-03-21 tcofoegbudevelop merge
2016-03-21 tcofoegbuJAL-1667 Changed PDBSearchPanel's search result layout...
2016-03-16 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-03-16 gmungocJAL-1705 xref ENST to correct (ENSP) accession id
2016-03-16 tcofoegbuJAL-2028 improvment to the displayed column customisation
2016-03-15 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h... mungo_develop
2016-03-15 gmungocJAL-2016 corrected Javadoc, added test for anonymous...
2016-03-15 gmungocJAL-2016 FeatureSettingsI now FeatureSettingsModelI
2016-03-15 gmungocJAL-1705 code tidy/comment only
2016-03-15 gmungocJAL-1705 compute reverse complement of variants on...
2016-03-15 tcofoegbuJAL-1919 refined structure view annotation settings...
2016-03-11 tcofoegbuJAL-1478 Fixed ArrayIndexOutOfBoundsException while...
2016-03-11 tcofoegbumerge
2016-03-11 tcofoegbuJAL-2026 Bug fix for best quality filter
2016-03-11 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-11 gmungocJAL-1270 unit test for SequenceIdMatcher.SeqIdName
2016-03-11 gmungocJAL-1705 check Retry-After response header
2016-03-11 gmungocJAL-1705 javadoc added only
2016-03-11 gmungocJAL-1705 refactoring etc for fetching Ensembl --> Uniprot
2016-03-11 tcofoegbuJAL-1818 reimplemented sequence and annotation processi...
2016-03-10 tcofoegbudevelop merge
2016-03-10 tcofoegbuJAL-2025 added code to stanitise query for structure...
2016-03-10 tcofoegbuJAL-2024 code to enforce case insensitivity for manual...
2016-03-07 gmungocJAL-2023 CDS sequences added to / share alignment dataset
2016-03-04 gmungocJAL-1705 EnsemblGenomes a top level db source
2016-03-04 gmungocJAL-1705 parse 'description' from GFF as sequence descr...
2016-03-03 tcofoegbuJAL-1919 fixed bug causing PDBfile test failure
2016-03-03 gmungocJAL-1705 unit test for aligning with incomplete start...
2016-03-03 tcofoegbudevelop merge
2016-03-03 tcofoegbuJAL-1919 updated unicode mapping symbol
2016-03-03 tcofoegbuJAL-1919 updated unicode symbol for mapping
2016-03-03 gmungocJAL-1705 include stop codons in derived CDS; support...
2016-03-03 tcofoegbuJAL-1919 PDBfile and JmolParser refactor
2016-03-02 gmungocJAL-1705 include any unmapped protein start 'X' when...
2016-03-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-03-01 gmungocJAL-1705 align CDS to transcripts
2016-03-01 gmungocJAL-1705 align CDS and peptide products to transcripts
2016-02-26 tcofoegbudevelop merge
2016-02-26 tcofoegbuJAL-2009 reverted 'RES NUM' feature back to 'RESNUM'
2016-02-26 tcofoegbuJAL-1994 updated implementation for broken tests
2016-02-26 tcofoegbuJAL-1994 fix for broken tests
2016-02-25 tcofoegbuJAL-1919 initial support for mmCIF using JMol API....
2016-02-25 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-23 tcofoegbudevelop merge
2016-02-23 tcofoegbuJAL-1720 renamed Structure Chooser filters according...
2016-02-22 tcofoegbuJAL-1720 JAL-2002 improvement for 'uniprot coverage...
2016-02-22 tcofoegbuJAL-1944 bugfix for error when exporting hidden sequenc...
2016-02-22 gmungocJAL-1705 first pass at applying preset feature colourin...
2016-02-20 gmungocMerge branch 'mungo_develop' into features/JAL-653_JAL...
2016-02-20 gmungocMerge branch 'JAL-1956_featureStyles' into features...
2016-02-20 gmungocJAL-2016 first draft of pre-set feature colour scheme
2016-02-20 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-19 gmungocJAL-1705 handle case of sequence with no dataset sequence
2016-02-19 gmungocJAL-1705 regular expression updates, tests, other refac...
2016-02-19 gmungocJAL-1705 updated for change to CrossRef signature
2016-02-19 gmungocJAL-1705 refactor show products, set initial split...
2016-02-19 gmungocJAL-1705 more lenient test for 'sequence retrieved'
2016-02-19 gmungocJAL-1705 return Ensembl genes for model species for...
2016-02-19 gmungocJAL-1705 JAL-1191 more terms added to hard-coded version
2016-02-19 gmungocJAL-1706 reverted setting start position as too confusi...
2016-02-19 gmungocJAL-1705 lenient DBRef matcher added (accession id...
2016-02-19 gmungocJAL-1705 helper method for mapping excluding stop codon
2016-02-19 tcofoegbuJAL-2009 Codes to enable storing inserted residues...
2016-02-12 gmungocJAL-1270 remove trailing space + test
2016-02-12 gmungocJAL-1705 various refactoring towards Uniprot-to-Ensembl...
2016-02-12 gmungocJAL-1191 additions to SOLite, tweak to test
2016-02-12 gmungocJAL-1705 take feature ID for description if nothing...
2016-02-12 gmungocJAL-282 wrap very long id in tooltip
2016-02-12 gmungocJAL-1705 JAL-1686 stronger SequenceFeature.equals(...
2016-02-12 gmungocJAL-2010 simple prototype of 'Highlight Selection'...
2016-02-12 gmungocJAL-2008 updates for String[] to List<String> change
2016-02-12 gmungocJAL-2008 avoid unnecessary repaints; signatures changed...
2016-02-12 gmungocJAL-265 updated help text
2016-02-12 gmungocMerge branch 'develop' into
2016-02-09 tcofoegbumerge develop
2016-02-09 tcofoegbuJAL-1976 catch and handle OOM Error
2016-02-09 tcofoegbuJAL-1976 Added progress indicators for HTML_SVG and...
2016-02-09 tcofoegbuJAL-1975 updated image export pipeline to produce more...
2016-02-09 tcofoegbuJAL-1957 deleted stale comment
2016-02-09 tcofoegbumerge
2016-02-09 tcofoegbuJAL-1957 enabled multi-chain mapping and highlight...
2016-02-05 gmungocJAL-2006 scale even very small score ranges to a usable...
2016-02-04 gmungocJAL-1544 spelling fix
2016-02-04 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-04 gmungocJAL-2005 added (stable) sort methods parameterised by
2016-02-04 gmungocJAL-599 bug fixed so array of visible types is populated
2016-02-04 gmungocJAL-1705 temporary variable to aid inspection in debugger
2016-02-04 gmungocJAL-1705 additional tests, validation regexp tweaks...
2016-02-04 gmungocJAL-2003 export features on alignment, not alignment...
2016-02-01 gmungocJAL-1705 further unit tests
2016-02-01 gmungocJAL-1705 set Uniprot xref as 'source dbref' (for SIFTS...
2016-02-01 gmungocJAL-1191 more terms added to SequenceOntologyLite
2016-02-01 gmungocMerge branch 'develop' into features/JAL-653_JAL-1766_h...
2016-02-01 gmungocJAL-1705 tests added
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