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2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen... commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 test that changing view association for PCA... features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767 commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 patch buggy PCA view association test commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3186 remove duplicate message keys commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-2069 wider dialog so all fields show! commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold... commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3125 tidy up commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-1767 failing test to check if the PCA view associat... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-3063 - ant task for regenerating JAXB schema -... commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 additional test for clover-added fields commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco commit | commitdiff | tree | snapshot
2018-12-21 gmungocJAL-1767 minimise local variable scope commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 commit | commitdiff | tree | snapshot
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-2846 ahem - proper release note for this fix from... commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-3178 known defect in release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 JAL-2846 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2846' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 tweaked release notes and documented JAL-2864 commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2864nullOverviewCanvas' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2750' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'task/JAL-3174_fixed_filename_tests' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3174 backout un-needed stacktrace for exception... commit | commitdiff | tree | snapshot
2018-12-17 Ben SoaresJAL-3174 Merging in some test filename-case fixes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2541cutRelocateFeatures' into... commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-2541 JAL-2822 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 bump release 2.11 release to January 2019 commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'develop' into bug/JAL-2541cutRelocateFeatures commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 dataset reference tests now in Functional... bug/JAL-3171_maintain_datasets_across_views commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 record mapping between unmarshalled sequence... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 raise warning when a dataset reference exists... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 more complex project test - where sequences... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 resolve dataset for imported projects via... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test for legacy projects and fixing... commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 register existing dataset for new view commit | commitdiff | tree | snapshot
2018-12-14 Jim ProcterJAL-3171 failing test checking preservation of dataset commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 fix Checkstyle import violations commit | commitdiff | tree | snapshot
2018-12-06 gmungocJAL-1854 Checkstyle updated to 8.12 commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 ignore Clover instrumentation in test (second... commit | commitdiff | tree | snapshot
2018-11-08 gmungocJAL-1889 unit test tweaks for running on server commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin... commit | commitdiff | tree | snapshot
2018-09-24 gmungocJAL-3063 tidy commented out code commit | commitdiff | tree | snapshot
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 tweaks to help text for filters commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... commit | commitdiff | tree | snapshot
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 top level element added to colours schema... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 New View via JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume... commit | commitdiff | tree | snapshot
2018-09-18 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 test method renamed to match code commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB commit | commitdiff | tree | snapshot
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff | tree | snapshot
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 gmungocJAL-1551 reinstated Save actions commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5 commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3106 use .jvp as default commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for... commit | commitdiff | tree | snapshot
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