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jalview.git
2015-04-13 gmungocJAL-1690 adjusted wording commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1693 make exon alignment for get-xref splitframe... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1681 work around ConcurrentModificationException... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1690 show 'scale protein' in protein _and_ dna... commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1695 new property ENABLE_SPLIT_FRAME commit | commitdiff | tree | snapshot
2015-04-13 gmungocJAL-1695 parameter controls whether SplitFrame is enabled commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1684 adjusting parameters for split frame applet... commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1690 scaleProteinAsCdna new applet parameter documented commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1270 protection against NullPointer when run as... commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1691 applet SplitFrame scrolling; pull up of 5... commit | commitdiff | tree | snapshot
2015-04-08 gmungocJAL-1270 separated standalone tests out of Jws2ParamVie... commit | commitdiff | tree | snapshot
2015-04-07 gmungocJAL-1270 test added commit | commitdiff | tree | snapshot
2015-04-07 gmungocJAL-1691 linked scrollling in split frame (Desktop) commit | commitdiff | tree | snapshot
2015-04-07 gmungocJAL-1691 defensive check for null commit | commitdiff | tree | snapshot
2015-04-02 gmungocJAL-1690 'scale protein as cDNA' options in Preferences... commit | commitdiff | tree | snapshot
2015-04-01 gmungocJAL-845 fixed start/end range of a mapped SequenceGroup commit | commitdiff | tree | snapshot
2015-04-01 gmungocJAL-1264 reinstate Show annotations menu item commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1264 remove broken applet build dependencies commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1270 fall back on compbio if no localhost:8080... commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1596 refactoring to allow unit tests to start and... commit | commitdiff | tree | snapshot
2015-03-30 gmungocJAL-1270 Cache.logger initialisation added commit | commitdiff | tree | snapshot
2015-03-27 tcofoegbuMerge branch 'merge/JAL-1667_PDBe_Search_API' into... commit | commitdiff | tree | snapshot
2015-03-27 tcofoegbumerge commit commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuJAL-1667 updated parseJsonExceptionString method in... features/JAL-1667_PDBe_Search_API commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuUpdated BioJsHTMLOutputTest asserts to include error... commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuMerge branch 'Release_2_8_3_Branch' of https://source... commit | commitdiff | tree | snapshot
2015-03-26 tcofoegbuModified BioJsHTMLOutputTest to test specific json... commit | commitdiff | tree | snapshot
2015-03-26 gmungocMerge develop to Release_2_8_3_Branch commit | commitdiff | tree | snapshot
2015-03-26 gmungocJAL-1688 compiler warnings removed commit | commitdiff | tree | snapshot
2015-03-26 gmungocJAL-1665 getSequenceFeatures; Desktop.getAlignFrames... commit | commitdiff | tree | snapshot
2015-03-25 gmungocJAL-1270 System.exit(0) changed to fail() so as not... commit | commitdiff | tree | snapshot
2015-03-25 tcofoegbuJAL-1667 clean up commented codes in PopupMenu.java... commit | commitdiff | tree | snapshot
2015-03-25 tcofoegbuJAL-1668 Tab for summary config, auto refresh after... commit | commitdiff | tree | snapshot
2015-03-19 tcofoegbuJAL-1668 finally clean up commit | commitdiff | tree | snapshot
2015-03-18 Charles OfoegbuJAL-1668 house keeping commit | commitdiff | tree | snapshot
2015-03-18 Charles OfoegbuJAL-1668 added PDBDocFieldPreference for configuring... commit | commitdiff | tree | snapshot
2015-03-16 Charles OfoegbuJAL-1668 added validation for manual entry of pdb struc... commit | commitdiff | tree | snapshot
2015-03-15 Charles OfoegbuJAL-1667 updated test and internationalization messages commit | commitdiff | tree | snapshot
2015-03-09 Jim ProcterMerge branch 'features/JAL-1565_jpred4' into Release_2_... commit | commitdiff | tree | snapshot
2015-03-09 Jim ProcterJAL-1565 loading a concise file causes insertions to... commit | commitdiff | tree | snapshot
2015-03-06 Charles OfoegbuJAL-1668 added filtering and sorting capabilites commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterJAL-1683 bump version for r2.8.3 branch commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterJAL-1683 replace year/version strings with tokens in... commit | commitdiff | tree | snapshot
2015-03-06 Jim Procterreassign features already created/documented for 2... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge commit 'ab43013b7e357b84b4abade0dba949668dfb2a0e... commit | commitdiff | tree | snapshot
2015-03-06 Jim ProcterMerge commit '6797d65989b01c8fa5bdeaf6a66e35279b66a7f7... commit | commitdiff | tree | snapshot
2015-03-06 Charles OfoegbuJAL-1667 refactoring to support JAL-1668 commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 fix replace token for launchApp in a buildwq commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1213 JAL-1395 add Jmol to JalviewLite classpath... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1678 add version parameter to example files in... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... commit | commitdiff | tree | snapshot
2015-03-05 Jim ProcterJAL-1643 add quaqua libs as OSX specific resources bug/JAL-1643_File-chooser-improvement commit | commitdiff | tree | snapshot
2015-03-04 Charles OfoegbuJAL-1668 First version JAL-1668 commit | commitdiff | tree | snapshot
2015-03-02 Charles Ofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-02-27 Jim ProcterMerge branch 'bug/addcustomlaunchdesktopparams' into... commit | commitdiff | tree | snapshot
2015-02-27 Jim ProcterJAL-1678 - patch to make sure we only compare positions... commit | commitdiff | tree | snapshot
2015-02-27 Jim Procterfix for JAL-1678 commit | commitdiff | tree | snapshot
2015-02-26 Charles OfoegbuJAL-1667 PDBe Search Interface implementation commit | commitdiff | tree | snapshot
2015-02-19 gmungocJAL-1665 refactored Sequence.getSequenceFeatures features/sequenceFeatureRefactor commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 added to 2.9 release notes commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 document changed behaviour commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 forgot to remove empty test commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 pass the columnselection rather then selected... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1350 cloned method and tested equivalence for using... commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 switch to lists in SequenceGroup commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 typecast commit | commitdiff | tree | snapshot
2015-02-12 Jim Procterjavadoc commit | commitdiff | tree | snapshot
2015-02-12 Jim ProcterJAL-1115 List rather than vector for sequence groups... commit | commitdiff | tree | snapshot
2015-02-06 Jim ProcterMerge branch 'bug/JAL-1643_File-chooser-improvement... commit | commitdiff | tree | snapshot
2015-02-05 Charles Ofoegbumerge commit commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 jarred up the quaqua native libraries and... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 added quaqua filechooser and jni libraries... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 correct version of quaqua (8) plus THIRDPARTYL... commit | commitdiff | tree | snapshot
2015-02-05 Jim ProcterJAL-1643 renamed quaqua library to add version number commit | commitdiff | tree | snapshot
2015-02-04 Charles OfoegbuJAL-1643 modified jalviewFileChooser to retain default... commit | commitdiff | tree | snapshot
2015-02-04 Charles OfoegbuJAL-1643 Modified JalviewFileChooser to have a more... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 added null check for sequence description... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge commit commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 revised Finder's implementation to use a flag... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuMerge branch 'bug/JAL-1644_Finder-logic-improvement... commit | commitdiff | tree | snapshot
2015-02-02 Charles OfoegbuJAL-1644 improvment of finder logic to include the... commit | commitdiff | tree | snapshot
2015-01-28 Jim ProcterJAL-1565 automatically mark query sequence as the seque... commit | commitdiff | tree | snapshot
2015-01-28 Jim Procter JAL-674 patch to make Mapping.compareTransferredToR... commit | commitdiff | tree | snapshot
2015-01-27 Jim ProcterJAL-674 JAL-1270 added settings to ensure temperature... commit | commitdiff | tree | snapshot
2015-01-27 gmungocJAL-1588 new class renamed commit | commitdiff | tree | snapshot
2015-01-26 gmungocMerge branch 'features/JAL-1588saveChimeraSession'... commit | commitdiff | tree | snapshot
2015-01-26 gmungocJAL-1588 restoring saved Chimera session(s) commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuMerge branch 'features/JAL-1553_improvement-select... commit | commitdiff | tree | snapshot
2015-01-23 gmungocJAL-1588 first working (?) restore of Chimera session... commit | commitdiff | tree | snapshot
2015-01-23 Charles OfoegbuJAL-1553 added help documentation and updated Annotatio... features/JAL-1553_improvement-select-column-by-annotation-row-query-interface commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterMerge branch 'feature_29/JAL-1372_referenceseq' into... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1541 changed assert to JUnit assert - test now... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 formatting commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1286 don't print an exception if a non-gzip stream... commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-1551 crlf changes commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-969 hasHiddenRows is now an interface method commit | commitdiff | tree | snapshot
2015-01-23 Jim ProcterJAL-969 drop the hiddenColumns flag in favour of checki... commit | commitdiff | tree | snapshot
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