jalview.git
2016-10-03 gmungocJAL-98 throw exception (unhandled) for int overthrow...
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount...
2016-10-03 gmungocJAL-98 bespoke fast percentage formatter for consensus...
2016-09-30 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory
2016-09-30 gmungocJAL-2236 code restored (and some compiler warnings...
2016-09-30 gmungocMerge branch 'develop' into features/JAL-1856dbRefFetch...
2016-09-30 gmungocJAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa
2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation...
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections...
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code...
2016-09-29 gmungocJAL-2213 made RESNUM constant private (not used elsewhe...
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;...
2016-09-29 gmungocJAL-2237 apply default filter as sort in initial search
2016-09-29 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-09-29 Jim ProcterJAL-2089 fix broken help link
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2236_filtercolumns_seqassoc...
2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation...
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into...
2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup
2016-09-29 gmungocJAL-2047 allow title to be shrunk; spelling fix
2016-09-29 gmungocJAL-1544 typo
2016-09-29 gmungocJAL-1903 increase REST reply timeout from 5 to 15 seconds
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol
2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progres...
2016-09-27 gmungocJAL-2230 JAL-2049 added sequence feature transfer to
2016-09-27 gmungocJAL-2230 use correct mapping to transfer features to...
2016-09-26 gmungocJAL-98 bug fix, string optimisation, sorted AA properties
2016-09-26 gmungocJAL-98 don't include gaps in maxResidue!
2016-09-26 gmungocJAL-98 generalised increment() to add() and made faster
2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop
2016-09-24 Jim ProcterJAL-1919 whats new link
2016-09-23 gmungocJAL-98 performance tweaks to use of SparseIntArray
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org...
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit
2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation...
2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structu...
2016-09-23 Jim ProcterJAL-1957 release notes
2016-09-23 Jim ProcterJAL-1962 release notes
2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair...
2016-09-23 gmungocJAL-98 first working version
2016-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
2016-09-23 Jim ProcterJAL-2189 JAL-1479 JAL-1491 JAL-1827 release notes
2016-09-23 gmungocJAL-2214 Javadoc
2016-09-23 gmungocJAL-98 use SparseIntArray (wip)
2016-09-23 gmungocJAL-98 Android SparseIntArray added
2016-09-22 Jim ProcterJAL-2275 release notes
2016-09-22 Jim ProcterJAL-2151 release notes
2016-09-22 gmungocJAL-1421 use declared type of ResidueProperties.propHash
2016-09-22 Jim ProcterJAL-2168 -news release notes
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176...
2016-09-22 Jim ProcterJAL-1557 release notes
2016-09-22 Jim ProcterJAL-2189 bumped date to 27th September \o/
2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows...
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy docs (new files...
2016-09-22 Jim ProcterJAL-2189 JAL-2092 popup show/hide cols with feature...
2016-09-22 gmungocJAL-2216 finalize call super.finalize()
2016-09-22 gmungocJAL-2216 finalise corrected to finalize
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation...
2016-09-22 Jim ProcterJAL-2189 JAL-2077 note about CTRL-Click to right click...
2016-09-22 Jim ProcterJAL-2189 tidy up docs
2016-09-22 gmungocJAL-2216 finalize() refactored so not called programmat...
2016-09-22 Jim ProcterJAL-1812 JAL-1868 release notes
2016-09-22 gmungocJAL-2216 new dispose() method to null references
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and...
2016-09-22 gmungocJAL-2216 finalize call super.finalize()
2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release...
2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus docum...
2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble...
2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse...
2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing
2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore...
2016-09-21 Jim ProcterJAL-2189 reworked annotation docs
2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not...
2016-09-19 Jim ProcterJAL-1577 release notes
2016-09-19 Jim ProcterJAL-2027 releasenotes
2016-09-19 Jim ProcterJAL-1563 release notes
2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documen...
2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054...
2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq document...
2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff...
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals
2016-09-19 gmungocJAL-2118 reorder annotations after add/delete/hide...
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie...
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org...
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection...
2016-09-19 tcofoegbumerge
2016-09-19 gmungocJAL-1353 small tidy of test
2016-09-19 gmungocJAL-1270 use test properties file
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned...
2016-09-16 Jim ProcterJAL-2189 clear out old what’s new and add ensembl and...
2016-09-16 Jim ProcterJAL-2189 JAL-1705 JAL-1795 ensembl fetching docs
2016-09-16 Jim ProcterJAL-2089 tidied docs for sequence fetcher

2016-09-16 Jim ProcterJAL-2089 release notes
2016-09-16 Jim ProcterJAL-2089 zero day for 2.10 - 20th Sep 2016
2016-09-16 Jim ProcterMerge branch 'patch/JAL-2164_updatesRESNUMtests' into...
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds...
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers...
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