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jalview.git
2016-10-03 gmungocJAL-98 throw exception (unhandled) for int overthrow... commit | commitdiff | tree | snapshot
2016-10-03 gmungocJAL-98 use Profile to store consensus, ResidueCount... commit | commitdiff | tree | snapshot
2016-10-03 gmungocJAL-98 bespoke fast percentage formatter for consensus... commit | commitdiff | tree | snapshot
2016-09-30 gmungocMerge branch 'develop' into bug/JAL-98consensusMemory commit | commitdiff | tree | snapshot
2016-09-30 gmungocJAL-2236 code restored (and some compiler warnings... commit | commitdiff | tree | snapshot
2016-09-30 gmungocMerge branch 'develop' into features/JAL-1856dbRefFetch... commit | commitdiff | tree | snapshot
2016-09-30 gmungocJAL-2234 FER1_ARATH renamed FER2_ARATH and vice versa commit | commitdiff | tree | snapshot
2016-09-30 gmungocJAL-2236 fixes for desktop and applet implementation... commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-1856 better warning messages for sequence matching... features/JAL-1856dbRefFetcherMessages commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-2213 code warnings addressed (typed collections... commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-2213 removed PDB from db sources list; also code... commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-2213 made RESNUM constant private (not used elsewhe... commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-2213 corrected wait for files to load in Jmol;... commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-2237 apply default filter as sort in initial search commit | commitdiff | tree | snapshot
2016-09-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-29 Jim ProcterJAL-2089 fix broken help link commit | commitdiff | tree | snapshot
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2236_filtercolumns_seqassoc... commit | commitdiff | tree | snapshot
2016-09-29 Jim ProcterJAL-2236 include associated sequence id for annotation... commit | commitdiff | tree | snapshot
2016-09-29 Jim ProcterMerge branch 'patch/JAL-2238_tcoffee_subgroups' into... commit | commitdiff | tree | snapshot
2016-09-29 Jim ProcterJAL-2236 fix: bail if no context available for subgroup commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-2047 allow title to be shrunk; spelling fix commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-1544 typo commit | commitdiff | tree | snapshot
2016-09-29 gmungocJAL-1903 increase REST reply timeout from 5 to 15 seconds commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2233 less verbose logging for Jmol commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2231 save preferred scroll height _without_ progres... commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2230 JAL-2049 added sequence feature transfer to commit | commitdiff | tree | snapshot
2016-09-27 gmungocJAL-2230 use correct mapping to transfer features to... commit | commitdiff | tree | snapshot
2016-09-26 gmungocJAL-98 bug fix, string optimisation, sorted AA properties commit | commitdiff | tree | snapshot
2016-09-26 gmungocJAL-98 don't include gaps in maxResidue! commit | commitdiff | tree | snapshot
2016-09-26 gmungocJAL-98 generalised increment() to add() and made faster commit | commitdiff | tree | snapshot
2016-09-24 Jim ProcterMerge branch 'releases/Release_2_10_Branch' into develop commit | commitdiff | tree | snapshot
2016-09-24 Jim ProcterJAL-1919 whats new link commit | commitdiff | tree | snapshot
2016-09-23 gmungocJAL-98 performance tweaks to use of SparseIntArray commit | commitdiff | tree | snapshot
2016-09-23 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-23 tcofoegbuJAL-2164 JAL-1919 fixed failed revert commit commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1957 JAL-1479 tweak SIFTS mappings documentation... commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1957 JAL-1479 mention SIFTS mappings in PDB Structu... commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1957 release notes commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-1962 release notes commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-2214 fix docs (consistent and correct base pair... commit | commitdiff | tree | snapshot
2016-09-23 gmungocJAL-98 first working version commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch commit | commitdiff | tree | snapshot
2016-09-23 Jim ProcterJAL-2189 JAL-1479 JAL-1491 JAL-1827 release notes commit | commitdiff | tree | snapshot
2016-09-23 gmungocJAL-2214 Javadoc commit | commitdiff | tree | snapshot
2016-09-23 gmungocJAL-98 use SparseIntArray (wip) commit | commitdiff | tree | snapshot
2016-09-23 gmungocJAL-98 Android SparseIntArray added commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2275 release notes commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2151 release notes commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-1421 use declared type of ResidueProperties.propHash commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2168 -news release notes commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-1421 typed ResidueProperties.propHash; JAL-2176... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-1557 release notes commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 bumped date to 27th September \o/ commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 null currentAlignFrame on close all windows... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy docs (new files... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-2092 popup show/hide cols with feature... commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalize call super.finalize() commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalise corrected to finalize commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 explicitly null AnnotationPanel and Annotation... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-2077 note about CTRL-Click to right click... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 tidy up docs commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalize() refactored so not called programmat... commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-1812 JAL-1868 release notes commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 new dispose() method to null references commit | commitdiff | tree | snapshot
2016-09-22 Jim ProcterJAL-2189 JAL-1812 JAL-2068 new groovy doc section and... commit | commitdiff | tree | snapshot
2016-09-22 gmungocJAL-2216 finalize call super.finalize() commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2189 JAL-2171 JAL-2214 JAL-1841 JAL-2215 release... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-1841 JAL-2214 updated RNA Structure Consensus docum... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2214 JAL-1841 compute canonical, canonicalAndWobble... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-1841 JAL-2215 add the ‘ignore gaps’ structure conse... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2214 test for strict Watson-Crick pairing commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2215 fix - trigger alignment update when ‘ignore... commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterJAL-2189 reworked annotation docs commit | commitdiff | tree | snapshot
2016-09-21 Jim ProcterMerge branch 'develop' into releases/Release_2_10_Branch commit | commitdiff | tree | snapshot
2016-09-20 gmungocJAL-1306 calculate Quality also when Conservation not... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-1577 release notes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2027 releasenotes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-1563 release notes commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 JAL-2002 revised the structure chooser documen... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 Release notes for JAL-2079 JAL-2084 JAL-2054... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 JAL-1369 JAL-192 expand referenceseq document... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2189 what’s new - ensembl, new structure stuff... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterJAL-2175 JAL-2170 fix sense for assertEquals commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-2118 reorder annotations after add/delete/hide... commit | commitdiff | tree | snapshot
2016-09-19 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-2172 test and code updates for readonly selection... commit | commitdiff | tree | snapshot
2016-09-19 tcofoegbumerge commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-1353 small tidy of test commit | commitdiff | tree | snapshot
2016-09-19 gmungocJAL-1270 use test properties file commit | commitdiff | tree | snapshot
2016-09-18 Jim ProcterJAL-1795 JAL-2206 prevent NPE when no data returned... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2189 clear out old what’s new and add ensembl and... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2189 JAL-1705 JAL-1795 ensembl fetching docs commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2089 tidied docs for sequence fetcher
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2016-09-16 Jim ProcterJAL-2089 release notes commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2089 zero day for 2.10 - 20th Sep 2016 commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterMerge branch 'patch/JAL-2164_updatesRESNUMtests' into... commit | commitdiff | tree | snapshot
2016-09-16 gmungocJAL-2157 JAL-1803 refactored Sequence.updatePDBIds... commit | commitdiff | tree | snapshot
2016-09-16 Jim ProcterJAL-2164 update asserts for padded residue numbers... commit | commitdiff | tree | snapshot
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