source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2006-11-06	amwaterhouse	accelerators, save menu item	commit \| commitdiff \| tree \| snapshot
2006-11-03	amwaterhouse	Alignpanel is not new if copied from j2xml	commit \| commitdiff \| tree \| snapshot
2006-11-03	amwaterhouse	Consensus may already have been removed	commit \| commitdiff \| tree \| snapshot
2006-11-03	amwaterhouse	Remove unnecessary refresh	commit \| commitdiff \| tree \| snapshot
2006-11-03	amwaterhouse	Use Jalview2XML to copy AlignmentPanel	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	return if image is null	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	Update editMenuBar after alignment changed	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	Set menu state in alignFrame	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	Fire align change for case change	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	History is per viewport	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	selected states set in updateMenusFromViewport	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	Use system path separator char	commit \| commitdiff \| tree \| snapshot
2006-11-02	amwaterhouse	dasregistry is now dasregistry.org	commit \| commitdiff \| tree \| snapshot
2006-10-30	amwaterhouse	Fix for feature name amended	commit \| commitdiff \| tree \| snapshot
2006-10-30	amwaterhouse	shift I to inverse sequence selection	commit \| commitdiff \| tree \| snapshot
2006-10-30	amwaterhouse	Append html	commit \| commitdiff \| tree \| snapshot
2006-10-30	amwaterhouse	Update features	commit \| commitdiff \| tree \| snapshot
2006-10-30	amwaterhouse	conservation lock	commit \| commitdiff \| tree \| snapshot
2006-10-30	amwaterhouse	deleteSequenceFeature	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	Remove consensus annotation if out of memory	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	updatingConsensus, updatingConservation is static ...	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	PaintRefresher can calculate seqs added or removed	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	Dont remove or add PaintRefresher registrations for...	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	-1 error	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	Reset colour schemes and alignmentChanged moved to...	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	If sequence is null, dont add it	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	New padgaps works out number of gaps to insert, delete	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	Rename old properties file before writing new	commit \| commitdiff \| tree \| snapshot
2006-10-27	amwaterhouse	Focus listener on Tabbed pane, gives keyboard focus...	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Only adds history item if size>0	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Returns number of columns deleted	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Remove system.out	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	void changeCase(ActionEvent e	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	set quality to null if removed	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	showConservation, quality, identity not used	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Dont readd the undo	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	check command.string[i] is not null	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Sequence length maybe less than end	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Error message changed	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Sequences may be hidden, not in this aligment	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Invert accelerators	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	sequence may be null if hidden or deleted	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Set alignFrame of gathered panels to be the source...	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	remove gaps size range	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	No need to reduce length if inserting more gaps at...	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Check if hiddenSequence has been deleted	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Known bugs fixed	commit \| commitdiff \| tree \| snapshot
2006-10-26	amwaterhouse	Dont scroll off width-1	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	We can delete sequence 0	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Return if negative width, ie alignment deleted	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Check hiddenSequence before placing in tmp	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Get sequence in routine	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	viewport.hasHiddenColumns updated after undo/redo performed	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	EditCommand added to AlignFrame	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Adjusts columnSelection correctly	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	Adjusts hiddenColumns correctly	commit \| commitdiff \| tree \| snapshot
2006-10-25	amwaterhouse	more accelerators	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Only send one call per sequence at the moment	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	ShowConservation, quality, identity not used	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Must set alignIndex before delete takes place	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Use EditCommand.Cut	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	HistoryItem replaced by CommandI	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	EditCommand implemented	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	must translate graphics back the same amountcvs diff...	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Change Case is undoable	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	SequenceIndex might be beyond old height	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Must catch image outOfMemoryError	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	changeCase, removeGaps moved to commands package	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	maxIdLength redundant, deleteCols, trimLeft, removeGaps...	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Uses RemoveGapsCommand	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Remove variables not used	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Remove unneccessary import	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Make everything final	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	New accelerators	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Commented out for compilation	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	setOrder is public	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Commands which can be done, or undone	commit \| commitdiff \| tree \| snapshot
2006-10-24	amwaterhouse	Its historycvs remove jalview/datamodel/HistoryItem...	commit \| commitdiff \| tree \| snapshot
2006-10-24	jprocter	fixes bug reported by Christopher Tan (help@jalview...	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Wait for response from server before next sequence	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	showqual, showcons never used	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	remove html and body from tooltip	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	new feature args	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Can set description for new features	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Faded anntotations when recalculating	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	set conserve and quality null if outofmemory	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	No longer a FeatureListener	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	parseDescriptionHTML	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	draw text after linkimage	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Remove system.out	commit \| commitdiff \| tree \| snapshot
2006-10-18	amwaterhouse	Gerneral XML parse error	commit \| commitdiff \| tree \| snapshot
2006-10-15	jprocter	fixed array out of bounds exception in copy constructor	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	showQuality may be updated during archive file load	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Convenient function findEndRes	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Add features from Popupmenu	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Overview may request index beyond alignment height	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Use i, not index if not representedSeqs	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	If conservation is null, disable Blosum62 and conservat...	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Annotasiont[j] might be null	commit \| commitdiff \| tree \| snapshot
2006-10-12	amwaterhouse	Local adjustForhiddenSeqs routine	commit \| commitdiff \| tree \| snapshot
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