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jalview.git
2017-09-03
Jim Procter
JAL-2675 typo
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2017-09-03
Jim Procter
Merge branch 'feature/JAL-2527' into documentation...
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2017-09-03
Jim Procter
JAL-2681 release notes
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2017-09-03
Jim Procter
Merge branch 'features/JAL-2681_duplicatecrossrefs...
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2017-09-01
gmungoc
JAL-2617 omit stop codon from synthesized CDS sequence
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2017-09-01
gmungoc
JAL-2216 remove alignment listener when Tree Panel...
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2017-09-01
gmungoc
JAL-2488 remove finalize methods
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2017-09-01
kiramt
JAL-2527 Additional test
feature/JAL-2527
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2017-09-01
kiramt
JAL-2527 Unit test for group colouring
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2017-08-31
kiramt
JAL-2527 Unit test
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2017-08-31
kiramt
JAL-2527 Fix typo
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2017-08-31
kiramt
JAL-2527 Updated Spanish, adjusted UI so Spanish fits
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2017-08-31
kiramt
JAL-2527 Updates following code review
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2017-08-31
gmungoc
JAL-2105 REST versions updated to 6.1 (Ensembl) 6.0...
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2017-08-31
gmungoc
JAL-2253 safer simpler resolution of identifiers using...
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2017-08-31
gmungoc
JAL-2704 unit test for Above PID gap colour, simplified...
bug/JAL-2704gapColourFading
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2017-08-30
gmungoc
JAL-2704 don't shade gap colour for PID/conservation
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2017-08-30
gmungoc
JAL-2685 score matrix in sysout formatted with sequence...
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2017-08-30
kiramt
JAL-2527 Code comments, tidy
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2017-08-30
kiramt
JAL-2527 Added default setting/resetting and first...
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2017-08-30
gmungoc
JAL-2685 tweaks to output spacing, updated TestAlignSeq...
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2017-08-30
gmungoc
JAL-2685 use actual selection for report of pairwise...
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2017-08-30
kiramt
JAL-2527 Wired up cached values to overview
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2017-08-30
kiramt
Merge remote-tracking branch 'origin/feature/2588'...
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2017-08-30
kiramt
Merge branch 'feature/JAL-2664' into feature/JAL-2527
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2017-08-30
kiramt
JAL-2587 Removed dissolve
feature/JAL-2587
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2017-08-29
kiramt
JAL-2664 Updates following review
feature/JAL-2664
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2017-08-29
Jim Procter
Merge branch 'patch/JAL-2698_blockingAutoAssociateDiaog...
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2017-08-29
kiramt
JAL-2527 Added overview prefs - don't get picked up...
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2017-08-29
Jim Procter
JAL-2698 spawn a thread to test for and raise auto...
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2017-08-29
kiramt
JAL-2665 OOM checks just in case
bug/JAL-2665-2.10.2b
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2017-08-29
kiramt
JAL-2665 OOM checks just in case
bug/JAL-2665-2.10.3
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2017-08-29
kiramt
JAL-2665 OOM check
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2017-08-29
kiramt
JAL-2665 ported fix to 2.10.3. Doesn't work.
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2017-08-29
kiramt
JAL-2665 Corrected to draw selections for wrapped printing
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2017-08-28
kiramt
JAL-2527 Started adding overview preferences
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2017-08-28
gmungoc
Merge branch 'bug/JAL-2687concurrentModification' into...
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2017-08-28
gmungoc
JAL-2608 close any Overview when alignment view is...
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2017-08-28
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-08-28
kiramt
Merge remote-tracking branch 'origin/releases/Release_2...
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2017-08-28
kiramt
JAL-2665 Changes for review comments; printing with...
bug/JAL-2665
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2017-08-27
Jim Procter
JAL-2691 assert chains are recovered by AAStructureBind...
bug/JAL-2691_nomultimermapping
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2017-08-27
Jim Procter
JAL-2691 catchall if passed dataset sequences (tests...
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2017-08-27
Jim Procter
JAL-2693 TODO comments
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2017-08-27
Jim Procter
JAL-2691 discover any existing chain mappings for a...
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2017-08-27
Jim Procter
JAL-2691 cached view combo box value javadoc
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2017-08-25
kiramt
JAL-2587 Removed duplicate events fired to progress bar
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2017-08-25
kiramt
JAL-2587 Removed annoying double repaint on hide insertions
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2017-08-25
kiramt
JAL-2587 Update overview progress bar while drawing...
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2017-08-25
gmungoc
JAL-2687 use Iterator.remove() for safe deletion while...
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2017-08-25
kiramt
JAL-2587 Progress bar sizing tweaks
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2017-08-25
gmungoc
JAL-2480 suppress debug timing output that got left in
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2017-08-25
kiramt
JAL-2587 Made progress bar display before overview...
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2017-08-23
gmungoc
JAL-2435 last lost commit e926a5d redone
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2017-08-23
gmungoc
JAL-2435 last lost commit e926a5d redone
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2017-08-23
gmungoc
JAL-2481 a smidgin more test coverage of findFeatures
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2017-08-23
gmungoc
JAL-2682 non-regex sequence id parsing, and tests added
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2017-08-23
gmungoc
JAL-2667 tests added, update status bar and tooltip
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2017-08-22
Jim Procter
JAL-1551 formatting
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2017-08-22
Jim Procter
JAL-2681 cross-ref selection for targeted debugging
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2017-08-22
Jim Procter
JAL-2681 source formatting
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2017-08-22
Jim Procter
JAL-2681 canonicalise DB source before fetching to...
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2017-08-22
Jim Procter
JAL-2681 formatting
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2017-08-22
gmungoc
JAL-2680 remove all mappings in test teardown
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2017-08-22
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2017-08-22
gmungoc
JAL-2609 tiny tidy
features/JAL-2609fastPaintWrapped
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2017-08-22
gmungoc
JAL-2609 corrections for print wrapped view
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2017-08-22
gmungoc
JAL-2609 unit test for annotations displayed case
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2017-08-22
gmungoc
JAL-2609 tweaks to, and tests for, calculateWrappedGeometry
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2609fastPaintW...
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2017-08-21
gmungoc
JAL-2609 tweaks including fully erasing scale above
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2017-08-21
gmungoc
JAL-2680 clear down all mappings before test
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2017-08-21
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
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2017-08-21
Jim Procter
Merge branch 'documentation/JAL-2675_release2102b1...
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2017-08-21
Jim Procter
JAL-2675 typo in what's new href
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2609fastPaintW...
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2017-08-21
Jim Procter
JAL-2588 don’t test char==gap until we know the shader...
feature/2588
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2017-08-21
Jim Procter
JAL-2588 field on overview colour finder for default...
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2017-08-21
gmungoc
Merge branch 'develop' into features/JAL-2446NCList
features/JAL-2446NCList
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2017-08-18
Jim Procter
JAL-2588 JAL-2603 JAL-2610 release notes and docs
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2017-08-18
Jim Procter
Merge branch 'feature/2588' into merge/develop_feature...
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2017-08-18
Jim Procter
Merge branch 'develop' into releases/Release_2_10_2_Branch
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2017-08-18
Jim Procter
JAL-2675 bump version for branch to 2.10.2b1
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2017-08-18
Jim Procter
Merge branch 'develop' into releases/Release_2_10_2_Branch
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2017-08-18
Jim Procter
JAL-1551 formatting
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2017-08-18
Jim Procter
JAL-2675 release notes entry for 2.10.2b1, updated...
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2017-08-18
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-08-18
kiramt
JAL-2664 Adjusted colour of hidden cols/seqs
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2017-08-18
kiramt
JAL-2664 Correct colouring for rows
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2017-08-18
kiramt
JAL-2662 Tidy
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2017-08-18
kiramt
Merge branch 'develop' into task/JAL-2662
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2017-08-18
kiramt
JAL-2662 First benchmark running
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2017-08-18
kiramt
Merge remote-tracking branch 'origin/develop' into...
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2017-08-18
kiramt
JAL-2665 Comments
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2017-08-18
kiramt
JAL-2665 Refactoring (and side-effect fix for JAL-2672)
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2017-08-18
kiramt
JAL-2665 tidies
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2017-08-17
kiramt
JAL-2665 Code tidies
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2017-08-17
kiramt
JAL-2665 Fixed wrapped mode group over >1 panel; and...
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2017-08-17
Jim Procter
Merge branch 'releases/Release_2_10_2_Branch'
Release_2_10_2
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2017-08-17
Jim Procter
JAL-2418 ahem - correct year for what's new
releases/Release_2_10_2_Branch
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