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jalview.git
2005-04-08
jprocter
updated build strategy and checking for portability.
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2005-04-07
amwaterhouse
no more group editor
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2005-04-07
amwaterhouse
check annotation label widths as well as id widths
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2005-04-07
amwaterhouse
calls repaint, not just refreshpanels
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2005-04-07
amwaterhouse
for now, draw selection box bottom -1
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2005-04-07
amwaterhouse
seals selection box if at bottom of alignment
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2005-04-07
amwaterhouse
draws threshold position according to threshold, not...
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2005-04-07
amwaterhouse
no longer used
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2005-04-07
amwaterhouse
Remove paintFlag ref
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2005-04-07
amwaterhouse
GRPAH_HEIGHT variable
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2005-04-07
amwaterhouse
checkfor gap characters
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2005-04-07
amwaterhouse
paintFlag removed
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2005-04-07
amwaterhouse
fastPaint flag added
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2005-04-07
amwaterhouse
reomve call to repaint
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2005-04-07
amwaterhouse
find top and bottom of group
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2005-04-07
amwaterhouse
add note about desktopManager
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2005-04-07
amwaterhouse
add fastPaint boolean
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2005-04-07
amwaterhouse
remove setdecorated line
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2005-04-07
amwaterhouse
amino acid gifs
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2005-04-06
amwaterhouse
dont draw first block if colour is null
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2005-04-06
amwaterhouse
fill in the gaps
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2005-04-06
amwaterhouse
setDesktopManager(new)
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2005-04-06
amwaterhouse
paint is now in drawComponent
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2005-04-06
amwaterhouse
showAnnotation added
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2005-04-06
amwaterhouse
annoation in print version
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2005-04-06
amwaterhouse
DONT SHOW ANNOTATIONS IF WRAPPED
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2005-04-06
jprocter
next version of Jpred functionality using new client...
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2005-04-06
jprocter
New method for helping to quickly map different aligned...
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2005-04-06
jprocter
New client code for JPred service includes return of...
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2005-04-06
amwaterhouse
mosueOver graph gives int, not float
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2005-04-06
amwaterhouse
Fast paint method implemented
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2005-04-01
amwaterhouse
Alignment Annotation added
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2005-04-01
amwaterhouse
ignore jnetconf
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2005-04-01
amwaterhouse
parses jpredfile into new alignment annotation
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2005-04-01
amwaterhouse
update conservation and consensus
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2005-04-01
amwaterhouse
anti_aliasing on
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2005-04-01
amwaterhouse
Uses conservation graph
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2005-04-01
amwaterhouse
testing Graphics2D
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2005-04-01
amwaterhouse
setMaximizable(false)
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2005-04-01
amwaterhouse
Build date determination
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2005-03-31
jprocter
doh - stupid jim.
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2005-03-31
jprocter
utility classes used in build.xml, and a dodgy perl...
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2005-03-31
jprocter
JavaC target set to 1.4 for proper compilation of 1...
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2005-03-31
jprocter
Added a flag to control if the "/<seq_start>-<seq_end...
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2005-03-31
jprocter
added a an axis log4j appender property to the jalview...
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2005-03-30
jprocter
new libraries for soap bits.
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2005-03-30
jprocter
fixed the log4j messages.
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2005-03-30
jprocter
cleaned up some comments and exception messages.
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2005-03-30
jprocter
Updated version of axis to fix the j1.5 webstart problems.
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2005-03-30
jprocter
Fixed a sensible default leaf distance (for files where...
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2005-03-24
amwaterhouse
fix printing error
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2005-03-23
amwaterhouse
new seq selection -1
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2005-03-23
amwaterhouse
adjustForRemoveLeft / Right added
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2005-03-23
amwaterhouse
works even if col is 1 residue
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2005-03-23
amwaterhouse
reads MSF files even if PILEUP is missing
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2005-03-23
amwaterhouse
drawableSequence removed
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2005-03-23
amwaterhouse
no longer used
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2005-03-23
amwaterhouse
secondarycolour not used
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2005-03-23
amwaterhouse
add .fasta to save dialog
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2005-03-23
amwaterhouse
correct wrap alignment scrollbar size
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2005-03-23
amwaterhouse
resetSeqLimits altered
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2005-03-23
amwaterhouse
override showSaveDialog to prompt user if file exists
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2005-03-22
amwaterhouse
put bioinformatics into message
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2005-03-22
amwaterhouse
drag and drop files into jalview
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2005-03-22
amwaterhouse
add swing runnable to refresh panel on startup
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2005-03-22
amwaterhouse
read start end if available
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2005-03-21
amwaterhouse
altered layout
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2005-03-21
amwaterhouse
alter vgap
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2005-03-21
amwaterhouse
identifies more varied blc files
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2005-03-21
amwaterhouse
blc file reader modified
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2005-03-21
amwaterhouse
add setValue method
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2005-03-21
amwaterhouse
fix select group bug
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2005-03-21
amwaterhouse
new method for outlining groups
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2005-03-21
amwaterhouse
add outline colour
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2005-03-21
amwaterhouse
prevent idpanel being to narrow
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2005-03-21
amwaterhouse
maintain slider values when click on a group
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2005-03-21
amwaterhouse
hide idwidthadjuster if wrapped
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2005-03-21
amwaterhouse
add coloursChanging boolean
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2005-03-21
amwaterhouse
group has outline colour
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2005-03-21
amwaterhouse
use system l&f
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2005-03-21
amwaterhouse
Created by jalview
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2005-03-21
amwaterhouse
correct eps png bug missing last 2 lines
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2005-03-21
amwaterhouse
darkened image
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2005-03-18
amwaterhouse
eps and png output
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2005-03-18
amwaterhouse
remove jpg output
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2005-03-18
amwaterhouse
save eps and png
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2005-03-18
amwaterhouse
delete postscript output!!
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2005-03-18
jprocter
rough JPredService client copied from WebServices project.
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2005-03-18
amwaterhouse
null point bug fixed
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2005-03-18
jprocter
various loadTree bits for loading and saving trees.
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2005-03-18
jprocter
merged Loadtree and EPSfile and changed crlf.
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2005-03-18
jprocter
Save tree.
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2005-03-18
jprocter
Load and Save trees.
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2005-03-18
jprocter
Tree io modifications, including support for polytomous...
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2005-03-18
jprocter
New constructors for turning NewickFile objects into...
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2005-03-18
amwaterhouse
add all suffixes to file open
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2005-03-18
amwaterhouse
png and eps
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2005-03-18
amwaterhouse
updated with all schemes in 1 table
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2005-03-18
amwaterhouse
dont' use index at the moment
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2005-03-18
amwaterhouse
eps output facility
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