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jalview.git
2016-12-16
gmungoc
JAL-2346 ensure view updates when annotation options...
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2016-12-16
Jim Procter
JAL-2360 report line number when threshold cannot be...
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2016-12-16
gmungoc
Merge branch 'develop' into bug/JAL-2346annotationChoice
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2016-12-16
gmungoc
JAL-2360 added UserColourScheme.toAppletParameter+test...
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2016-12-16
gmungoc
JAL-2360 getColour() renamed to getColourScheme(),...
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2016-12-16
gmungoc
JAL-1705 JAL-98 use SortedMap as more accurate type...
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2016-12-16
gmungoc
JAL-2360 refactoring for JalviewColourScheme enum,
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2016-12-16
gmungoc
JAL-1354 use i18n text for expected value
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2016-12-15
kiramt
JAL-2316 Changes following review.
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2016-12-14
gmungoc
JAL-2360 test added
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2016-12-14
gmungoc
JAL-2360 added check for null annotations array
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2016-12-14
gmungoc
JAL-1544 JAL-2360 reformatted help page a bit nicer...
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2016-12-14
Jim Procter
Merge branch 'patch/JAL-2197_jpredforjnets' into develop
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2016-12-13
kiramt
Merge branch 'develop' into features/JAL-2316
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2016-12-13
gmungoc
JAL-2365 test for lightgray, darkgray not lightGray...
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2016-12-13
gmungoc
JAL-2360 code formatting only and if-else changed to...
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2016-12-13
gmungoc
JAL-2361 adding items to applet colour menus, TCoffee...
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2016-12-13
kiramt
JAL-2316 Documentation update
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2016-12-12
gmungoc
JAL-2361 extract methods to (re-)build colour menu
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2016-12-12
gmungoc
JAL-2360 simplify nucleotide flag, remove setter
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2016-12-12
gmungoc
JAL-2361 use consistent colour names on menus
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2016-12-12
gmungoc
JAL-1544 backgroud -> background
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2016-12-12
kiramt
JAL-2316 Added GUI checks for duplicate link ids
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2016-12-12
kiramt
JAL-2316 Unit test update to UrlLinkTableModel and...
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2016-12-12
kiramt
JAL-2316 Added jalview.urls.* packages
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2016-12-12
kiramt
JAL-2316 Missed change from previous checkin
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2016-12-12
kiramt
JAL-2316 More unit testing and adjustments
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2016-12-12
gmungoc
JAL-2362 return correct lower-case colour; Javadoc...
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2016-12-12
gmungoc
JAL-2632 corrected lookup of residue colour
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2016-12-12
kiramt
JAL-2316 Unit tests
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2016-12-09
kiramt
JAL-2316 Unit test updates and associated minor changes...
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2016-12-09
gmungoc
JAL-2105 updated for reviewed REST version 4.8
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2016-12-09
kiramt
JAL-2316 Unit testing, relax constraint that default...
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2016-12-09
gmungoc
JAL-1895 suppress RNA interaction colour option
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2016-12-08
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-12-08
gmungoc
JAL-2359 add Window menu entry only after all danger...
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2016-12-07
gmungoc
JAL-2356 use cached Sifts file if not expired
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2016-12-07
kiramt
JAL-2316 Unit test for download client
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2016-12-07
gmungoc
JAL-2354 handle error response when fetching features
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2016-12-07
gmungoc
JAL-2344 handle null format, simplify JalviewFileChoose...
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2016-12-07
kiramt
JAL-2316 Restructure identifiers.org download
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2016-12-05
gmungoc
JAL-2346 JAL-1553 pull-up / push-down of fields and...
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2016-12-05
kiramt
JAL-2316 Added UrlProvider factories. Tidied up labelling.
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2016-12-05
gmungoc
JAL-1753 JAL-1596 JAL-1933 ensure AWT updates are on...
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2016-12-05
kiramt
JAL-2316 Adjusted unit tests. Tidied UrlLinkProviderI...
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2016-12-05
gmungoc
Merge branch 'features/JAL-1933_occupancy' into feature...
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2016-12-04
Jim Procter
JAL-1933 show occupancy count as a tooltip
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2016-12-04
Jim Procter
JAL-1933 switch from gap count to occupancy
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2016-12-02
gmungoc
Merge branch 'features/JAL-1933_occupancy' into feature...
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2016-12-02
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-12-02
gmungoc
JAL-1933 gap value as description; minor formatting
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2016-12-02
kiramt
JAL-2316 GUI to allow to insert tokens into new URL...
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2016-12-02
gmungoc
JAL-2346 Javadoc correction
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2016-12-02
gmungoc
Unit tests added, minor refactoring
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2016-12-02
gmungoc
JAL-2346 fixed bug (in code not reached by Jalview)
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2016-12-02
kiramt
JAL-2316 GUI updates to Connections tab in Preferences...
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2016-12-02
gmungoc
JAL-2346 unit test for annotation drop-down list builder
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2016-12-01
gmungoc
JAL-2346 unused method removed
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2016-12-01
gmungoc
JAL-2346 save annotation id instead of label with annot...
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2016-12-01
gmungoc
JAL-2346 restore choice of annotation for colouring...
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2016-12-01
Jim Procter
JAL-1933 update the bounds for the Gap annotation row...
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2016-12-01
Jim Procter
JAL-1933 basic hack to get gap counts shown as an annot...
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2016-11-30
Jim Procter
Merge branch 'features/JAL-2320_closeChimeraAction...
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2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-30
gmungoc
JAL-2344 use ".cif" for saved mmCIF file (and refactor...
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2016-11-30
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-29
gmungoc
JAL-2329 tests to confirm behaviour of Java extended...
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2016-11-29
gmungoc
Merge branch 'develop' into features/JAL-2295setChimera...
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2016-11-29
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2016-11-29
gmungoc
JAL-2344 corrected conversion of Type enum to FileFormat
features/JAL-2344FileFormatI
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2016-11-29
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-29
Jim Procter
JAL-2325 update release date in whatsNew
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2016-11-29
gmungoc
JAL-2344 FileFormat.isStructureFile replaces
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2016-11-29
Jim Procter
Merge branch 'develop' of source.jalview.org/git/jalvie...
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2016-11-29
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-28
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-28
Jim Procter
JAL-2325 JAL-1878 update minimum versions of JRE for...
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2016-11-28
tcofoegbu
Merge branch 'features/JAL-2326_JOptionPane-refactoring...
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2016-11-28
gmungoc
JAL-2344 added FileFormatI.isStructureFile()
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2016-11-28
gmungoc
JAL-2345 cache generated ImageIcon per file path
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2016-11-28
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-28
Jim Procter
JAL-2325 finalise release notes
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2016-11-25
gmungoc
JAL-2344 dynamically determine recognised extensions...
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2016-11-25
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-25
Jim Procter
JAL-2325 JAL-2273 update vms bound to different installers
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2016-11-25
Jim Procter
JAL-2325 more ignores on sourcedist build
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2016-11-25
gmungoc
Merge branch 'develop' into trialMerge
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2016-11-25
gmungoc
JAL-2344 override to ignore (obsolete?) JalviewFileView
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2016-11-25
gmungoc
JAL-2344 use .equals() to compare FileFormatI objects
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2016-11-25
gmungoc
JAL-2344 correct roundtrip test to exclude Jalview...
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2016-11-24
tcofoegbu
JAL-2326 added setup method for JvOptionPane in all...
features/JAL-2326_JOptionPane-refactoring
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2016-11-24
gmungoc
Distinguish text-only output formats and others (.jar...
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2016-11-24
tcofoegbu
JAL-2326 updated references of JOptionPane to JvOptionPane
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2016-11-24
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-24
Jim Procter
JAL-2325 exclude .class and .* files (install anywhere...
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2016-11-24
Jim Procter
Merge branch 'documentation/JAL-2325_release2101' into...
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2016-11-24
Jim Procter
JAL-2325 applied BSD license for chimera/StrucViz2...
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2016-11-24
gmungoc
Further tweaks to get tests passing
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2016-11-24
tcofoegbu
JAL-2326 added layer of abstraction between Jalview...
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2016-11-24
Jim Procter
JAL-2325 apply license to new source files
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