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jalview.git
2012-04-11
jprocter
scrub classpath
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2012-04-10
jprocter
Merge branch 'test_paolo_JAL-1065' into Release_2_7_Branch
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2012-04-10
jprocter
Merge branch 'Tcoffee_JAL-1065' of https://source.jalvi...
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2012-04-09
Paolo Di Tommaso
JAL-1065 - Visualize T-Coffee quality scores for an...
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2012-04-09
Paolo Di Tommaso
JAL-1066 - T-Coffee color scheme + signature change...
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2012-04-09
Paolo Di Tommaso
JAL-1067 - T-Coffee score file reader
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2012-04-09
Paolo Di Tommaso
JAL-1067 - T-Coffee score file parser
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2012-02-12
Jim Procter
(JAL-1016) noted position where race condition occurs
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2012-02-12
Jim Procter
(JAL-1022) ensure all Jmol model filenames are normalis...
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2012-02-12
Jim Procter
(JAL-1022) reverted to original strategy of escaping...
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2012-02-12
Jim Procter
(JAL-1050) ensure all filenames passed in to the load...
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2012-02-12
Jim Procter
(JAL-1025 JAL-1022) File based equivalence used to...
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2012-02-12
Jim Procter
(JAL-1049) only store state reference for sequence...
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2012-02-12
Jim Procter
JAL-1025 JAL-1022 use File based equivalence to map...
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2012-02-12
Jim Procter
JAL-715 - remove platform dependent includes
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2012-01-11
jprocter
Merge branch 'JAL-1023_viewall2structsw7' into Release_...
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2012-01-11
jprocter
removed empty lines and fields in manifest like:
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2011-12-08
jprocter
(JAL-1023) ensure filename is properly escaped before...
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2011-12-08
jprocter
remove commented lines
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2011-12-08
jprocter
simple escape utility class for JAL-1023 patch
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2011-11-21
jprocter
Merge branch 'JAL-368_dragabovedesktop' into Release_2_...
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2011-11-21
jprocter
(JAL-368) ensure window never gets a negative Y coordin...
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2011-11-20
jprocter
Merge branch 'patch_JAL-1004' into Release_2_7_Branch
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2011-11-20
jprocter
(JAL-1004) add mouse listener to internal panel
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
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2011-11-09
jprocter
(JAL-986) rendering to imageMap counts as rendering...
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2011-11-09
jprocter
Merge branch 'JAL-986_idwidthprefs' into Release_2_7_Branch
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2011-11-09
jprocter
(JAL-985,JAL-986) documentation and tooltips
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2011-11-09
jprocter
(JAL-985,JAL-986) allow different ID margin calculation...
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2011-11-09
jprocter
(JAL-985,JAL-986) preference widgets for settings
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2011-11-09
jprocter
(JAL-985,JAL-986) preferences documentation
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2011-11-09
jprocter
(JAL-986) getter for integer user preference properties
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2011-11-09
jprocter
(JAL-980) jmol classpath patch
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2011-11-04
jprocter
Merge branch 'Release_2_7_branch'
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2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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2011-11-04
jprocter
(JAL-980) patch netbeans and installAnywhere builds
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2011-11-04
jprocter
Merge branch 'JAL-980_jmol_patch' into Release_2_7_Branch
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2011-11-04
jprocter
(JAL-980) use proper release number for Jmol libs ...
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2011-11-04
jprocter
(JAL-980,JAL-982) - applet console only allows console...
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2011-11-04
jprocter
(JAL-980) update binding for refactored Jmol constants...
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2011-11-04
jprocter
(JAL-980) update Jmol library to 12.2.16452 (built...
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2011-10-21
jprocter
Merge branch 'Release_2_7_Branch_hotfix_JAL-962' into...
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2011-10-21
jprocter
(JAL-965) new api methods to allow features to be loade...
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2011-10-21
jprocter
(JAL-962) rejig parameter processing order so groups...
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2011-10-21
jprocter
(JAL-962) allow group visibility to be specified before...
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2011-10-03
jprocter
Merge branch 'Release_2_7_Branch'
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2011-10-03
jprocter
redact previous commit - fileassociation tag not allowe...
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2011-10-03
jprocter
removed unnecessary parameters and changed alignment...
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2011-10-03
jprocter
compile swingreader component for java 1.5 (JAL-948)
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2011-09-28
jprocter
Merge branch 'Release_2_7_Branch'
Release_2_7
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2011-09-28
jprocter
jnlps with and without file associations for default...
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2011-09-28
jprocter
broken link. rearranged opening pg
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2011-09-27
jprocter
typo
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2011-09-27
jprocter
switch to git release building
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2011-09-27
jprocter
patch name, reference and URL for Multi-Harmony : JAL-724
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2011-09-27
jprocter
ensure server errors return a URL and response document...
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2011-09-27
jprocter
use jalview properties preference to enable RSBS editor...
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2011-09-27
jprocter
same overzeaolous logic (JAL-915)
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2011-09-27
jprocter
start of Release 2.7
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2011-09-27
jprocter
JAL-944 - replaced stale PFAM links for 2.7 release...
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2011-09-27
jprocter
backout overzealous logic disabling feature links in...
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2011-09-27
jprocter
NPE fix
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2011-09-27
jprocter
apply version 2.7 copyright
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2011-09-26
jprocter
exclude build artefacts from repository
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2011-09-26
jprocter
updated documentation table of contents, menus and...
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2011-09-26
jprocter
documentation for news reader (JAL-943)
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2011-09-26
jprocter
tweak installer with IA2010 - fixes installerObjects...
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2011-09-26
jprocter
fix jar dependency in InstallAnywhere
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2011-09-26
jprocter
tidying classpath and fixing InstallAnywhere build
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2011-09-26
jprocter
tweaked dialog layout. should consider refactoring
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2011-09-26
jprocter
add new dependencies for 2.7 release
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2011-09-26
jprocter
make news window a modal dialog on the jalview desktop...
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2011-09-26
jprocter
avoid deprecation and ensure dialog close event is...
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2011-09-25
jprocter
organise imports
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2011-09-25
jprocter
more focus fixing (JAL-943)
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2011-09-25
jprocter
fix logic to ensure first check for news is correct...
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2011-09-23
jprocter
try even harder to get focus - for benefit of windows...
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2011-09-23
jprocter
ensure blog window gets put to front after dialogs...
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2011-09-23
jprocter
debugged example file again - old version had view...
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2011-09-22
jprocter
refactor and remove excess imports (JAL-943)
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2011-09-22
jprocter
jalview rss reader based on jswingreader (JAL-943)
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2011-09-20
jprocter
help documentation for Jalview 2.7
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2011-09-16
jprocter
JAL-747 - made warning message friendlier and more...
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2011-09-16
jprocter
fix for JAL-895 - new exampleFile_2_7.jar and logic...
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2011-09-16
jprocter
numerically ataxic comments.
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2011-09-16
jprocter
JAL-574 added option to enable/disable 'follow selectio...
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2011-09-16
jprocter
JAL-940 - removed legacy service options from preferenc...
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2011-09-16
jprocter
JAL-468 typo and label length in dialog
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2011-09-16
jprocter
patch for JAL-935 - warning messages raised when alignm...
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2011-09-16
jprocter
JAL-468 JAL-936 sort alignment by tree and autosort...
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2011-09-16
jprocter
tweak english
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2011-09-15
jprocter
documentation for new preferences (JAL-234 and web...
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2011-09-15
jprocter
documentation for JAL-234
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2011-09-15
jprocter
JAL-860 fixed grammar for one structure vs many structu...
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2011-09-15
jprocter
JAL-854 tweaked menu layout so services appear before...
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2011-09-14
jprocter
typo
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2011-09-14
jprocter
JAL-234 - default button to reset min/max colours and...
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2011-09-14
jprocter
JAL-934 - refactor to use label font functions
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2011-09-14
jprocter
JAL-934 - refactor to use label font functions
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2011-09-14
jprocter
JAL-934 - standard label font functions
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