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jalview.git
2021-09-13 Jim ProcterMerge branch 'features/r2_11_2/JAL-3829_3dbeacons'... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterJAL-3829 ensure unmock the FTS PDB and TDB clients... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterJAL-3829 minimal test of additional TDB filters - not... commit | commitdiff | tree | snapshot
2021-09-13 Jim ProcterJAL-3829 select single best TDB structure and select... commit | commitdiff | tree | snapshot
2021-09-12 Jim ProcterJAL-3829 JalviewJS workarounds/patches commit | commitdiff | tree | snapshot
2021-09-12 Jim ProcterJAL-3829 upgrade Jmol to 14.31.53, SwingJS-JSMol to... commit | commitdiff | tree | snapshot
2021-09-11 Jim ProcterJAL-3829 ensure tests use mocked service - proper excep... commit | commitdiff | tree | snapshot
2021-09-11 Jim ProcterJAL-3829 patch failing tests and todo for future commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 provide both PDBe queries and 3D-Beacons queri... commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 insert title for structures from PDBe commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 update for v1.0 3d-beacons api spec commit | commitdiff | tree | snapshot
2021-09-10 Jim ProcterJAL-3829 point at production 3d-beacons url commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 refactor and JAL-3391 JAL-2935 first stab... commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 allow client-side selection of structures... commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 JAL-3868 TODO commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 formatting commit | commitdiff | tree | snapshot
2021-09-08 Jim ProcterJAL-3829 integration test verifying mock response is... commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 work in progress - look up additional metadata... commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 look up column in FTS data commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 mocking for PDBFTS for related query to Unipro... commit | commitdiff | tree | snapshot
2021-09-06 Jim ProcterJAL-3829 pull out structure chooser query source tests... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 JAL-3865 test structure chooser queries to... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 use sequence dependent constructor for structu... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 mocking for testing 3D-Beacons FTS endpoint commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3863 promote non-canonical version of dbref to... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 comments on the 3D structure chooser’s initial... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3865 isolate PDB and TDB clients and last query... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3863 passing test to verify a uniprot accession... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 JAL-3865 StructureChooserQuerySource implement... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3855 don’t need to query Alphafold2 repository... commit | commitdiff | tree | snapshot
2021-09-03 Jim ProcterJAL-3829 refactored FilterOption provider to the Struct... commit | commitdiff | tree | snapshot
2021-09-02 Jim ProcterMerge branch 'develop' into features/r2_11_2/JAL-3829_3... commit | commitdiff | tree | snapshot
2021-09-02 Jim ProcterMerge branch 'cherry-pick/r2_11_2_JAL-3509' into develop commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-1842 unit test updated for EnsemblGene feature... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-1842 adjust code to match changed semantics of... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-3509 JAL-1842 minor tidying of code commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-1842 remove redundant call to FeatureRenderer.featu... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-3509 better placement of call to notifyFeaturesChan... commit | commitdiff | tree | snapshot
2021-09-02 gmungocJAL-3509 coerce RESNUM to hidden (really) after fetchin... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3863 fix test and note about fragility commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3863 add canonical DBRefEntry flag to Jalview project commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 generalised Alphafold retrieval mechanism... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3863 mark first accession retrieved from Uniprot... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 Structure chooser specific FTS interface and... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterMerge branch 'feature/JAL-3855_ebi_alphafold_import... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 3d-beacons structure chooser logic (not yet... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 pulled out more of the FTS dependent parts... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 updated tests for 3db fetcher’s working FTS... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 proof in principle 3d-beacons sequence fetcher... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 3d-beacons has a custom alignment retrieval... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 fixed up the 3d-beacons data columns definitio... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 JAL-2176 - TODO re unused argument in FTSRestC... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 tidying up PDBFTSRestClient test responses... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 Javadoc for FTSColumnPreferences commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 pushed the PDBFTSClient specific code to new... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 removed unneeded attribute in FTS core commit | commitdiff | tree | snapshot
2021-08-30 arngucciJAL-3829_spike minor changes commit | commitdiff | tree | snapshot
2021-08-30 arngucciJAL-3832 Gui working, with 3DBeacons parameters commit | commitdiff | tree | snapshot
2021-08-30 arngucciMerge branch 'arnaud/develop' into arnaud/JAL-3929_spik... commit | commitdiff | tree | snapshot
2021-08-30 Jim ProcterJAL-3829 forgot to add in the dummy 3d-beacons db proxy commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3674 Jmol seems to sometimes return a null for... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 suppress NPE when trying to retrieve SIFTS... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 ALPHAFOLD database source based on the PDB... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 check if an alpha fold ID and retrieve using... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 check for existence of an alpha fold model... commit | commitdiff | tree | snapshot
2021-07-27 Jim ProcterJAL-3855 convenience method to check a URL will return... commit | commitdiff | tree | snapshot
2021-07-21 Ben SoaresJAL-3850 fixed full class name commit | commitdiff | tree | snapshot
2021-07-21 Ben SoaresJAL-3850 using reflection for SimpleHttpFileServerFactory commit | commitdiff | tree | snapshot
2021-06-18 Ben SoaresJAL-3594 Updated the Jalview Develop getdown splashscre... commit | commitdiff | tree | snapshot
2021-06-09 Jim ProcterJAL-3840 don’t update the modal residue count for gaps patch/JAL-3840_2_11_2 commit | commitdiff | tree | snapshot
2021-06-09 Jim Procterfixes JAL-3840 commit | commitdiff | tree | snapshot
2021-06-09 Jim ProcterJAL-3840 failing test - show that addGaps overflows commit | commitdiff | tree | snapshot
2021-06-08 Ben SoaresMerge branch 'develop' into improvement/JAL-3830_macOS_... commit | commitdiff | tree | snapshot
2021-04-26 Ben SoaresJAL-3248 Moved old README to doc/old_README and put... commit | commitdiff | tree | snapshot
2021-04-26 Ben SoaresJAL-3743 JAL-3745 Fixed NullPointerExceptions happening... commit | commitdiff | tree | snapshot
2021-04-22 Ben SoaresJAL-3833 Allow setHiDPI and setHiDPIScale to work more... commit | commitdiff | tree | snapshot
2021-04-18 Ben SoaresJAL-3833 cap the scaling used by HiDPISetting for incor... commit | commitdiff | tree | snapshot
2021-04-13 Ben SoaresJAL-3830 Improved jalview.bat to find either pwsh.exe... commit | commitdiff | tree | snapshot
2021-04-06 Jim ProcterJAL-3832 dummy 3d-beacons database client and code... commit | commitdiff | tree | snapshot
2021-04-06 arngucciJAL-3829 more testing wit tdbeacons data columns and... arnaud/develop commit | commitdiff | tree | snapshot
2021-04-01 ArnaldoJAL-3829 attempt to fix my changes to follow the Jira... commit | commitdiff | tree | snapshot
2021-03-31 Ben SoaresJAL-3830 BAT file wrapper around powershell, so jalview... commit | commitdiff | tree | snapshot
2021-03-30 Ben SoaresJAL-3830 Follow all SymbolicLinks in Windows powershell... commit | commitdiff | tree | snapshot
2021-03-29 Arnaldofixed last commit commit | commitdiff | tree | snapshot
2021-03-29 ArnaldoRequest now parses the whole structures, need to fix... commit | commitdiff | tree | snapshot
2021-03-26 Ben SoaresJAL-3830 delete channel.props and channel.propsv when... commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoTDB.executeRequest fix & test passed commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoAdded (and passed !)all the FTS tests from test.fts... commit | commitdiff | tree | snapshot
2021-03-25 ArnaldoCreated 3Dbeacons data_columns.txt Test passed for... commit | commitdiff | tree | snapshot
2021-03-24 Ben SoaresJAL-3830 Moved wrappers to bin/jalview.* and make a... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 Allow paths to start with '~'. Make path check... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 Now using a single universal bash script ... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 add the windows bash script to getdown files... commit | commitdiff | tree | snapshot
2021-03-17 Ben SoaresJAL-3830 bash script that works in both cygwin and... commit | commitdiff | tree | snapshot
2021-03-15 Ben SoaresJAL-3830 Delete wrapper scripts and getdown *v files... commit | commitdiff | tree | snapshot
2021-03-15 Ben SoaresJAL-3830 powershell wrapper tested on linux, macos... commit | commitdiff | tree | snapshot
2021-03-15 Arnaldoadded untracked parsing attempts files commit | commitdiff | tree | snapshot
2021-03-15 ArnaldoAdding tests for 3DB, currently 2/4 corrects on PanelTest commit | commitdiff | tree | snapshot
2021-03-14 Ben SoaresJAL-3830 minor fix in powershell wrapper commit | commitdiff | tree | snapshot
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