-Jalview Readme
---------------
+Please see doc/building.md for up to date build and running instructions for the Java desktop application.
-
-The source is available as a tar file and comes complete with the GNU General Public License.
-
-To build the application you will need a J2SDK 1.7+.
-
-An Ant build file (build.xml) is provided, you will need to install Apache Ant first.
-Run ant to view usage which will display a list of useful build targets.
-
-Jalview is primarily developed with eclipse, and a .project file is provided to simplify importing the source into your own eclipse workspace. A NetBeans nbbuild.xml file is also provided for developing Jalview with NetBeans - but this is not officially supported.
-
-You may also be able to use Borland JBuilder to build Jalview. A JBuilder project file
-(JalviewX.jpx, JalviewApplet.jpx) for both application and applet is provided,
-but the library dependencies are almost certainly out of date. See the build.xml
-for current dependencies.
-
-##
-
-Jalview-JS
-
-To enable transpilation of Jalview's code:
-
-1. Locate the 'dropins' directory in your eclipse installation and copy swingjs/net.sf.j2s.core.jar to it.
- - typically it is at the top of the Eclipse installation, or on OSX under Eclipse.app/Contents/Eclipse
-
-2. Restart Eclipse
-
-3. If all is well you should see the 'Java2Script' builder is listed as the primary builder for the Jalview project.
- if not, this is because your properties file needs to have the standard java builder replaced with the following:
- <name>net.sf.j2s.core.java2scriptbuilder</name>
-
-- otherwise Javascript files will now be generated in the site/swingjs/j2s directory whenever a build occurs
-
-4. Execute the 'unzip-to-site' task (if it isn't automatically run) to update the site directory with the latest versions of SwingJS, varna-js, JSmol and other dependencies required by Jalview.
-
-
-
-
-
-##
-
-For more help, read the file doc/building.html
-
-
-##################
-
-To run application...
-[ NOTE: when using the -classpath option with the '*' wildcard, the argument must be quoted to avoid shell expansion of the wildcard,
- ALSO, the wildcard MUST be as DIR/* and not DIR/*.jar etc or it will not be interpreted correctly ]
-
-on Windows use:
- java -classpath "JALVIEW_HOME/lib/*;JALVIEW_HOME/jalview.jar" jalview.bin.Jalview
-and on MacOS or Linux:
- java -classpath "JALVIEW_HOME/lib/*:JALVIEW_HOME/jalview.jar" jalview.bin.Jalview
-
-Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If building from source:
-
- java -classpath "JALVIEW_BUILD/dist/*" jalview.bin.Jalview
-
-
-##################
-
-
-If you use a proxy server add
-
--Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT
-
-If the proxy server requires authentication, add
-
--Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD
+JalviewJS.
+See README_GRADLE_JALVIEWJS-2019-10-22.md for build instructions for JalviewJS.
+This is a little sparse but enough to do the transpilation.
--- /dev/null
+Jalview Readme
+--------------
+
+
+The source is available as a tar file and comes complete with the GNU General Public License.
+
+To build the application you will need a J2SDK 1.7+.
+
+An Ant build file (build.xml) is provided, you will need to install Apache Ant first.
+Run ant to view usage which will display a list of useful build targets.
+
+Jalview is primarily developed with eclipse, and a .project file is provided to simplify importing the source into your own eclipse workspace. A NetBeans nbbuild.xml file is also provided for developing Jalview with NetBeans - but this is not officially supported.
+
+You may also be able to use Borland JBuilder to build Jalview. A JBuilder project file
+(JalviewX.jpx, JalviewApplet.jpx) for both application and applet is provided,
+but the library dependencies are almost certainly out of date. See the build.xml
+for current dependencies.
+
+##
+
+Jalview-JS
+
+To enable transpilation of Jalview's code:
+
+1. Locate the 'dropins' directory in your eclipse installation and copy swingjs/net.sf.j2s.core.jar to it.
+ - typically it is at the top of the Eclipse installation, or on OSX under Eclipse.app/Contents/Eclipse
+
+2. Restart Eclipse
+
+3. If all is well you should see the 'Java2Script' builder is listed as the primary builder for the Jalview project.
+ if not, this is because your properties file needs to have the standard java builder replaced with the following:
+ <name>net.sf.j2s.core.java2scriptbuilder</name>
+
+- otherwise Javascript files will now be generated in the site/swingjs/j2s directory whenever a build occurs
+
+4. Execute the 'unzip-to-site' task (if it isn't automatically run) to update the site directory with the latest versions of SwingJS, varna-js, JSmol and other dependencies required by Jalview.
+
+
+
+
+
+##
+
+For more help, read the file doc/building.html
+
+
+##################
+
+To run application...
+[ NOTE: when using the -classpath option with the '*' wildcard, the argument must be quoted to avoid shell expansion of the wildcard,
+ ALSO, the wildcard MUST be as DIR/* and not DIR/*.jar etc or it will not be interpreted correctly ]
+
+on Windows use:
+ java -classpath "JALVIEW_HOME/lib/*;JALVIEW_HOME/jalview.jar" jalview.bin.Jalview
+and on MacOS or Linux:
+ java -classpath "JALVIEW_HOME/lib/*:JALVIEW_HOME/jalview.jar" jalview.bin.Jalview
+
+Replace JALVIEW_HOME with the full path to Jalview Installation Directory. If building from source:
+
+ java -classpath "JALVIEW_BUILD/dist/*" jalview.bin.Jalview
+
+
+##################
+
+
+If you use a proxy server add
+
+-Dhttp.proxyServer=YOUR.SERVER -Dhttp.proxyPort=YOURPORT
+
+If the proxy server requires authentication, add
+
+-Dhttp.proxyUser=USERNAME -Dhttp.proxyPassword=PASSWORD
git://source.jalview.org / jalview.git / commitdiff