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2016-07-04 Jim ProcterJAL-2137 resolve baseURI for prepending to alignments... commit | commitdiff | tree | snapshot
2016-07-04 Jim ProcterMerge branch 'develop' into spike/JAL-2040_JAL-2137_phyre2 commit | commitdiff | tree | snapshot
2016-07-01 tcofoegbuJAL-2135 bugfix for error preventing processing of... commit | commitdiff | tree | snapshot
2016-06-30 tcofoegbuJAL-2074 Improvement to StructureChooser and FTS interf... commit | commitdiff | tree | snapshot
2016-06-30 Jim ProcterJAL-2137 basic implementation of STRUCTMODEL annotation... commit | commitdiff | tree | snapshot
2016-06-30 Jim ProcterJAL-2137 JAL-2040 test and data for importing models... commit | commitdiff | tree | snapshot
2016-06-30 tcofoegbuJAL-1919 updated PDBSequenceFetcherTest and JMol parser... commit | commitdiff | tree | snapshot
2016-06-29 Jim ProcterJAL-2137 STRUCTMODEL statement added, logic not yet... commit | commitdiff | tree | snapshot
2016-06-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-29 tcofoegbuJAL-1479 added test case to elaborate getEntityByMostOp... commit | commitdiff | tree | snapshot
2016-06-29 gmungocJAL-1270 avoid overwriting .jalview_properties with... commit | commitdiff | tree | snapshot
2016-06-29 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-29 tcofoegbuJAL-1479 improved Sifts PID calculation for determining... commit | commitdiff | tree | snapshot
2016-06-29 gmungocJAL-1369 fix bug reloading a project with group sequenc... commit | commitdiff | tree | snapshot
2016-06-28 tcofoegbuJAL-1479 minor refactor and housekeeping commit | commitdiff | tree | snapshot
2016-06-28 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-28 tcofoegbuJAL-1479 improved SiftsClient test coverage and impleme... commit | commitdiff | tree | snapshot
2016-06-27 gmungoctidied loop with generic iteration / loop variable commit | commitdiff | tree | snapshot
2016-06-27 gmungocJAL-2133 refactored duplicated code to AlignmentViewport commit | commitdiff | tree | snapshot
2016-06-27 gmungocJAL-1369 additional asserts in testStoreAndRecoverRefer... commit | commitdiff | tree | snapshot
2016-06-27 gmungocJAL-1270 unit tests for HiddenSequences commit | commitdiff | tree | snapshot
2016-06-24 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-24 tcofoegbuJAL-1960 updated unit test to include the test case... commit | commitdiff | tree | snapshot
2016-06-23 gmungocJAL-2130 now simply viewer.dispose() to close down... commit | commitdiff | tree | snapshot
2016-06-23 tcofoegbuJAL-1996 added notes for an alternative way to view... commit | commitdiff | tree | snapshot
2016-06-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-22 tcofoegbuJAL-1996 added link for viewing example source codes... commit | commitdiff | tree | snapshot
2016-06-22 gmungocJAL-2015 fixed bug in copy constructor and added tests commit | commitdiff | tree | snapshot
2016-06-22 gmungocJAL-1982 defensive checks for null annotations array commit | commitdiff | tree | snapshot
2016-06-22 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-22 gmungocJAL-1982 defensive test for null array of annotations commit | commitdiff | tree | snapshot
2016-06-22 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-22 tcofoegbuJAL-1996 removed quick links in example pages, added... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-06-21 gmungocJAL-2074 suppress prompt to save closed Groovy script... commit | commitdiff | tree | snapshot
2016-06-21 gmungocJAL-1270 remove test artefact file after test commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterMerge branch 'features/JAL-1956_featureStyles' into... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1270 ensure before/after clauses have at least... commit | commitdiff | tree | snapshot
2016-06-21 gmungocJAL-1270 added runAlways=true to setUp method commit | commitdiff | tree | snapshot
2016-06-21 gmungocJAL-2074 reuse Groovy window when reopening; rebind... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-2089 cleared out old ‘What’s new’ commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-192 JAL-1369 release notes commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterMerge branch 'features/JAL-1369_refseqproject' into... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 make sure desktop is cleared before test starts commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 jalview2xml tests need to be run sequentially commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 mark reference sequence & view state and resto... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 project XML efficiency TODO commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 dead code TODO? commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 ensure *real* alignment’s metadata written... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 fix the test commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 make sure the fake AlignmentI produced by... commit | commitdiff | tree | snapshot
2016-06-21 Jim ProcterJAL-1369 HUGE WARNING: datamodel.HiddenSequences is... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1369 updated project schema - flag on JSeq to mark... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1369 failing test commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1989 JAL-1011 release notes commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2086 JAL-2085 release notes commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2065 release notes commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterMerge branch 'bugs/JAL-2065' into develop commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2065 port patch to applet commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1551 tidy commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1551 tidy commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2065 don’t pass stale group reference commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2068 avoid ArrayIndexOutOfBounds when consensus... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2065 check position lies within group before gettin... commit | commitdiff | tree | snapshot
2016-06-20 tcofoegbuJAL-1996 added JalviewApplet to download list in applet... commit | commitdiff | tree | snapshot
2016-06-20 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-20 tcofoegbuJAL-1823 Deleted two obsolete methods in PopupMenu... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterMerge branch 'r291_docs' into develop commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1812 groovy always present commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1812 release notes commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1812 documentation TBC for AlignFrame->Calculate... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-2089 typo commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterJAL-1868 fix typo in test data. commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterMerge branch 'features/JAL-1812_JAL-2083_groovyBinding... commit | commitdiff | tree | snapshot
2016-06-20 Jim ProcterMerge branch 'develop' into features/JAL-1812_JAL-2083_... features/JAL-1812_JAL-2083_groovyBinding commit | commitdiff | tree | snapshot
2016-06-20 gmungocJAL-2130 call viewer.dispose() on closing Jmol commit | commitdiff | tree | snapshot
2016-06-20 gmungocJAL-1667 updated PDB example query to a valid id (witho... commit | commitdiff | tree | snapshot
2016-06-17 tcofoegbuJAL-1823 Updated tooltip to reflect how a specific... commit | commitdiff | tree | snapshot
2016-06-17 tcofoegbuJAL-1976 clear message if export is cancelled at 'Rende... commit | commitdiff | tree | snapshot
2016-06-17 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-17 tcofoegbuJAL-1996 update applet deployment note pages commit | commitdiff | tree | snapshot
2016-06-17 gmungocJAL-1557 selection from annotation (and group annotatio... commit | commitdiff | tree | snapshot
2016-06-17 tcofoegbuJAL-1976 improved exception handler. commit | commitdiff | tree | snapshot
2016-06-17 tcofoegbuJAL-1976 added an intermediate message between a user... commit | commitdiff | tree | snapshot
2016-06-16 Jim Proctertests for validating start-end number/sequence length... commit | commitdiff | tree | snapshot
2016-06-16 gmungocJAL-1993 close sequence fetcher when opening database... commit | commitdiff | tree | snapshot
2016-06-16 gmungocJAL-2124 JAL-1990 additional translations commit | commitdiff | tree | snapshot
2016-06-16 gmungocJAL-2112 optimisation of EMBL CDS parsing commit | commitdiff | tree | snapshot
2016-06-16 gmungocJAL-1993 hide sequence fetcher dialogue until database... commit | commitdiff | tree | snapshot
2016-06-15 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-15 tcofoegbuJAL-2002 disabled 'Best Uniport Coverage' filter. JAL... commit | commitdiff | tree | snapshot
2016-06-15 gmungocJAL-2025 unit tests added commit | commitdiff | tree | snapshot
2016-06-15 gmungocJAL-2101 unit test updated to match config file commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuJAL-2102 right justify 'Mass' in uniprot FTS, and ... commit | commitdiff | tree | snapshot
2016-06-14 gmungocJAL-2114 more helpful reporting of parse failures commit | commitdiff | tree | snapshot
2016-06-14 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuJAL-2047 trapped block that could likely cause ClassCas... commit | commitdiff | tree | snapshot
2016-06-14 tcofoegbuJAL-2047 resolved structure chooser's displayed column... commit | commitdiff | tree | snapshot
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