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jalview.git
2019-03-01 gmungocMerge branch 'bug/JAL-3164complementOverview' into... commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'merge/JAL-3140' into develop commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3140 update for change to SequenceI api commit | commitdiff | tree | snapshot
2019-03-01 gmungocMerge branch 'feature/intervalStoreJ' into merge/JAL... commit | commitdiff | tree | snapshot
2019-03-01 gmungocJAL-3140 reduced coupling to intervalstore.jar feature/intervalStoreJ commit | commitdiff | tree | snapshot
2019-02-28 gmungocJAL-3140 confine intervalstore imports to jalview.datam... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'bug/JAL-2420revealAllMenu' into develop commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'bug/JAL-3166npeAllRowsHidden' into develop commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'feature/JAL-3169cancelOverwrite' into... commit | commitdiff | tree | snapshot
2019-02-28 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into merge... commit | commitdiff | tree | snapshot
2019-02-28 gmungocMerge remote-tracking branch 'origin/feature/JAL-3141_b... commit | commitdiff | tree | snapshot
2019-02-28 Jim ProcterMerge branch 'feature/JAL-3141_backupfiles_for211'... merge/develop_feature/JAL-3141_backupfiles_for211 commit | commitdiff | tree | snapshot
2019-02-27 gmungocJAL-2527 default Overview 'hide hidden' i.e. WYSIWYG commit | commitdiff | tree | snapshot
2019-02-26 gmungocJAL-3201 group colour schemes distinct instances commit | commitdiff | tree | snapshot
2019-02-25 gmungocJAL-3200 fast lookup of DSSP3 notation commit | commitdiff | tree | snapshot
2019-02-24 gmungocJAL-3198 don't recalculate group conservation for Id... commit | commitdiff | tree | snapshot
2019-02-24 gmungocJAL-3198 SequenceGroup 'bulk constructor' without dupli... commit | commitdiff | tree | snapshot
2019-02-22 gmungocJAL-2915 don't recalculate Overview on scroll to positi... commit | commitdiff | tree | snapshot
2019-02-22 gmungocJAL-2738 don't set AF as feature score commit | commitdiff | tree | snapshot
2019-02-22 Ben SoaresJAL-3141 improved message for asking whether to delete... commit | commitdiff | tree | snapshot
2019-02-21 Ben SoaresJAL-3141 Sensible refactoring for confirming deleting... commit | commitdiff | tree | snapshot
2019-02-17 Ben SoaresJAL-3141 User warning when deleting old backup files... commit | commitdiff | tree | snapshot
2019-02-15 Ben SoaresJAL-3141 re-order deletion of old files and check lastM... commit | commitdiff | tree | snapshot
2019-02-14 Ben SoaresJAL-3141 Added warning/confirmation when suffixReverse... commit | commitdiff | tree | snapshot
2019-02-14 Ben SoaresJAL-3141 Moved 'Previously saved scheme' combo box... commit | commitdiff | tree | snapshot
2019-02-07 gmungocJAL-3140 updated to latest intervalstore.jar commit | commitdiff | tree | snapshot
2019-02-04 gmungocJAL-3143 update unit test for ID -> id change feature/JAL-3143ensemblJSON commit | commitdiff | tree | snapshot
2019-02-01 Ben SoaresJAL-3141 Slight efficiency gain in detecting backupfile... commit | commitdiff | tree | snapshot
2019-01-30 Ben SoaresJAL-3141 Enabled the 'Include backpup files' checkbox... commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a good fix for updating the FileChooser... commit | commitdiff | tree | snapshot
2019-01-29 Ben SoaresJAL-3141 Found a (not ideal) fix for updating the FileC... commit | commitdiff | tree | snapshot
2019-01-29 gmungocJAL-3143 format alleles array for feature description commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 improvement on BackupFilenameParts filename... commit | commitdiff | tree | snapshot
2019-01-28 Ben SoaresJAL-3141 fixed test commit | commitdiff | tree | snapshot
2019-01-25 Ben SoaresJAL-3141. This adds quite a lot of code to allow an... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Added a '.fa' to filename examples commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Change of label (change of '_' character to... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Change of label commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Removed border around example filenames in... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 New layout and wording of Backups Preferences... commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Eclipse re-formatting of file commit | commitdiff | tree | snapshot
2019-01-24 gmungocJAL-3018 Ensembl version updated to 9.0 commit | commitdiff | tree | snapshot
2019-01-24 Ben SoaresJAL-3141 Reformatted code in eclipse commit | commitdiff | tree | snapshot
2019-01-23 Ben SoaresJAL-3141 Added Presets options in the Backups Preferenc... commit | commitdiff | tree | snapshot
2019-01-23 gmungocJAL-3063 correct handling of absent choice element... commit | commitdiff | tree | snapshot
2019-01-22 Ben SoaresJAL-3141 Fixed what happens when suffix template has... commit | commitdiff | tree | snapshot
2019-01-22 Ben SoaresJAL-3141 New message translations commit | commitdiff | tree | snapshot
2019-01-21 Ben SoaresJAL-3141 Rejigged the Preferences tab and changed some... commit | commitdiff | tree | snapshot
2019-01-21 Ben SoaresJAL-3141 Fixed tests for new placement of suffix after... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 removing diagnostic output commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Fixed example filenames in Preferences pane... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Changed suffix position to after the extension... commit | commitdiff | tree | snapshot
2019-01-20 Ben SoaresJAL-3141 Re-added some changes in Jalview2XML missed... commit | commitdiff | tree | snapshot
2019-01-18 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into featur... commit | commitdiff | tree | snapshot
2019-01-18 Jim ProcterMerge branch 'develop' into feature/JAL-3063jaxbNoCastor commit | commitdiff | tree | snapshot
2019-01-18 gmungocJAL-3143 'id' not 'ID' attribute drives generation... commit | commitdiff | tree | snapshot
2019-01-17 Jim ProcterJAL-3116 clear out whitespace when materialising Sequen... commit | commitdiff | tree | snapshot
2019-01-16 Ben SoaresJAL-3141 Remove no longer used exampleLabel commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'feature/JAL-3063jaxbNoCastor' into develop commit | commitdiff | tree | snapshot
2019-01-16 Jim ProcterMerge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JA... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 test that changing view association for PCA... features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767 commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 refactor associated view logic to public metho... commit | commitdiff | tree | snapshot
2019-01-15 Jim ProcterJAL-1767 patch buggy PCA view association test commit | commitdiff | tree | snapshot
2019-01-14 Ben SoaresJAL-3141 Forgot this file, sorry! commit | commitdiff | tree | snapshot
2019-01-14 Ben SoaresJAL-3141 Added a 'Save Project as...' File menu item... commit | commitdiff | tree | snapshot
2019-01-14 Ben SoaresJAL-3141 Made more constants commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3186 remove Variable Colour from popup menu commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3186 remove duplicate message keys commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-2069 wider dialog so all fields show! commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-2069 clear any error colour when setting threshold... commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3125 tidy up commit | commitdiff | tree | snapshot
2019-01-14 gmungocJAL-3125 avoid slider 'rounding' threshold field value commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 removed redundant method to tests commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-1767 failing test to check if the PCA view associat... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-3063 remove stale JAXB binding POJO commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into features/pca_j... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into feature/JAL... commit | commitdiff | tree | snapshot
2019-01-09 Jim ProcterJAL-3063 - ant task for regenerating JAXB schema -... commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 language word ending corrections commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 Added i18n for the example filenames in Prefer... commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 forgot to add this file after extracting the... commit | commitdiff | tree | snapshot
2019-01-09 Ben SoaresJAL-3141 Made one more suggested change from code review commit | commitdiff | tree | snapshot
2019-01-08 Ben SoaresJAL-3141 Made some more suggested changes from code... commit | commitdiff | tree | snapshot
2019-01-08 Ben SoaresJAL-3141 Made some suggested changes from code review commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 additional test for clover-added fields commit | commitdiff | tree | snapshot
2019-01-03 gmungocJAL-1889 ignore 'synthetic' fields added for jacoco commit | commitdiff | tree | snapshot
2018-12-21 gmungocJAL-1767 minimise local variable scope commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-1767 port save/load PCA panel to JAXB - JAL-3063 commit | commitdiff | tree | snapshot
2018-12-20 Jim ProcterJAL-3171 JAL-3063 merge updates from JAL-1767 commit | commitdiff | tree | snapshot
2018-12-19 Jim ProcterMerge branch 'features/JAL-1767pcaInProject' into bug... commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-2791 JAL-2808 correct Javadoc for api method commit | commitdiff | tree | snapshot
2018-12-19 gmungocJAL-3032 ignore /site also on non-JS branches commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-2846 ahem - proper release note for this fix from... commit | commitdiff | tree | snapshot
2018-12-18 Jim ProcterJAL-3178 known defect in release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 JAL-2846 release notes commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterMerge branch 'bug/JAL-2846' into develop commit | commitdiff | tree | snapshot
2018-12-17 Jim ProcterJAL-3111 tweaked release notes and documented JAL-2864 commit | commitdiff | tree | snapshot
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