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jalview.git
2018-12-17
Jim Procter
Merge branch 'bug/JAL-2864nullOverviewCanvas' into...
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2018-12-17
Jim Procter
JAL-2865 release notes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2750' into develop
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2018-12-17
Jim Procter
Merge branch 'task/JAL-3174_fixed_filename_tests' into...
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2018-12-17
Jim Procter
JAL-3174 backout un-needed stacktrace for exception...
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2018-12-17
Ben Soares
JAL-3174 Merging in some test filename-case fixes
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2018-12-17
Jim Procter
Merge branch 'bug/JAL-2541cutRelocateFeatures' into...
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2018-12-17
Jim Procter
JAL-2541 JAL-2822 release notes
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2018-12-17
Jim Procter
JAL-3111 bump release 2.11 release to January 2019
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2018-12-17
Jim Procter
Merge branch 'develop' into bug/JAL-2541cutRelocateFeatures
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2018-12-14
Jim Procter
JAL-3171 dataset reference tests now in Functional...
bug/JAL-3171_maintain_datasets_across_views
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2018-12-14
Jim Procter
JAL-3171 record mapping between unmarshalled sequence...
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2018-12-14
Jim Procter
JAL-3171 raise warning when a dataset reference exists...
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2018-12-14
Jim Procter
JAL-3171 more complex project test - where sequences...
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2018-12-14
Jim Procter
JAL-3171 resolve dataset for imported projects via...
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2018-12-14
Jim Procter
JAL-3171 failing test for legacy projects and fixing...
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2018-12-14
Jim Procter
JAL-3171 register existing dataset for new view
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2018-12-14
Jim Procter
JAL-3171 failing test checking preservation of dataset
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2018-12-10
gmungoc
JAL-1421 added type to List and Vector
feature/JAL-3169cancelOverwrite
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2018-12-10
gmungoc
JAL-3169 leave file browser open on Cancel in overwrite...
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2018-12-06
gmungoc
JAL-1854 fix Checkstyle import violations
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2018-12-06
gmungoc
JAL-1854 Checkstyle updated to 8.12
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2018-12-03
gmungoc
JAL-3063 Castor removed from codebase
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2018-12-03
gmungoc
Merge branch 'feature/JAL-3063JAXB' into feature/JAL...
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2018-11-30
gmungoc
JAL-2420 don't offer Reveal All over alignment panel
bug/JAL-2420revealAllMenu
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2018-11-30
gmungoc
JAL-3166 catch NPE if all sequences are hidden
bug/JAL-3166npeAllRowsHidden
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2018-11-29
gmungoc
JAL-3140 updated IntervalStore jar
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2018-11-29
gmungoc
JAL-3140 named tagged version of intervalstore.jar
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2018-11-29
gmungoc
JAL-3140 NCList now via IntervalStore library
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2018-11-28
gmungoc
JAL-3164 redraw complement overview on hide columns
bug/JAL-3164complementOverview
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2018-11-20
Ben Soares
.gitignore changes
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2018-11-08
gmungoc
JAL-1889 ignore Clover instrumentation in test (second...
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2018-11-08
gmungoc
JAL-1889 unit test tweaks for running on server
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2018-11-05
Ben Soares
JAL-3141 Slightly improved message and more thorough...
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2018-11-05
Ben Soares
JAL-3141 couple of minor fixes for example files being...
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2018-11-02
Ben Soares
JAL-3141 Tests now available and working, bringing...
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2018-11-01
Ben Soares
JAL-3141 Preferences 'Backups' tab now fits. Moved...
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2018-10-31
Ben Soares
JAL-3141 Preferences 'Backups' tab now working. Doesn...
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2018-10-25
gmungoc
JAL-3143 unit tests updated for code changes!
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2018-10-25
Ben Soares
JAL-3141 Ostensibly all backups working for alignment...
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2018-10-25
gmungoc
JAL-3143 comma-delimited feature attributes for alleles,
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2018-10-25
gmungoc
JAL-3143 fetch Ensembl(Genomes) features as JSON not GFF
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2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
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2018-10-24
Ben Soares
JAL-3141 Code checkout. Not compiling.
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2018-10-23
Ben Soares
BackupFilter and other unfinished business
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2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
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2018-10-22
Ben Soares
JAL-3141 Taken the backing up code out of FileChooser...
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2018-10-22
Ben Soares
JAL-3141 Tidying
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2018-10-19
Ben Soares
JAL-3141 Backup files being created with default suffix...
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2018-09-28
gmungoc
JAL-3063 service param files read/saved using JAXB...
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2018-09-28
gmungoc
JAL-3063 top level element added to JalviewWsParamSet.xsd
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2018-09-28
gmungoc
JAL-3063 comments re use of xjc to generate Java bindin...
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2018-09-24
gmungoc
JAL-3063 tidy commented out code
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2018-09-21
gmungoc
JAL-3063 wrappers with check for null getting optional...
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2018-09-20
gmungoc
JAL-2843 tweaks to help text for filters
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2018-09-20
gmungoc
JAL-2843 help text for colour by attribute, feature...
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2018-09-19
Jim Procter
Merge branch 'bug/JAL-3120restoreFeatureColour' into...
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2018-09-19
gmungoc
JAL-3120 preserve plain colour value when changing...
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2018-09-19
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-19
Jim Procter
Merge branch 'cherrypick/JAL-2808_notabs' into develop
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2018-09-19
Jim Procter
JAL-2808 JAL-3026 deleted all commented out tab code...
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2018-09-19
gmungoc
JAL-2808 JAL-3032 drop tabbed layout for Colours and...
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2018-09-19
gmungoc
JAL-3063 use JAXB for 'Save as Project' and load projec...
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2018-09-19
gmungoc
JAL-3063 unit test for save/load project switched to...
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2018-09-18
gmungoc
JAL-3063 Save/Load user defined colours using JAXB
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2018-09-18
gmungoc
JAL-3063 Save/Load user colour scheme using JAXB
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2018-09-18
gmungoc
JAL-3063 top level element added to colours schema...
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2018-09-18
gmungoc
JAL-3063 New View via JAXB
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2018-09-18
gmungoc
JAL-3063 temporary extra menu option to save/load proje...
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2018-09-18
gmungoc
JAL-3063 first version of Jalview2XML using JAXB to...
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2018-09-18
gmungoc
JAL-3063 JAXB binding classes generated by xjc from...
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2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB tool xjc recognises XML...
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2018-09-18
gmungoc
JAL-3063 tweak schema so JAXB generates enums for enume...
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2018-09-18
Jim Procter
JAL-2865 release notes
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2018-09-17
gmungoc
JAL-3116 test method renamed to match code
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2018-09-17
gmungoc
JAL-3116 unit tests adapted to EMBL over JAXB
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2018-09-14
gmungoc
JAL-3116 parse EMBL XML with JAXB (todo: update unit...
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2018-09-13
gmungoc
JAL-3116 Uniprot XML unmarshalled using JAXB not Castor
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2018-09-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-12
Jim Procter
Merge branch 'merge/JAL-3091_JAL-3111_develop_211'...
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2018-09-12
gmungoc
Merge branch 'develop' of https://source.jalview.org...
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2018-09-12
gmungoc
JAL-1551 reinstated Save actions
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2018-09-11
Jim Procter
JAL-3112 increased TEST_TIMEOUT to 9000ms - needed...
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2018-09-11
Jim Procter
JAL-3112 Use classgraph to reconstruct the classpath...
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2018-09-11
Jim Procter
Merge branch 'merge/JAL-3091_JAL-3111_develop_211'...
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2018-09-11
Jim Procter
JAL-3111 drop hts-1.33 as a dependency (in favour of...
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2018-09-11
Jim Procter
Merge branch 'merge/JAL-3091_JAL-3111_develop_211'...
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2018-09-11
Jim Procter
Merge branch 'releases/Release_2_11_Branch' into merge...
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2018-09-11
Jim Procter
Merge branch 'develop' into releases/Release_2_11_Branch
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2018-09-09
Jim Procter
JAL-3091 changed release date to 10th September - tweak...
releases/Release_2_10_5_Branch
Release_2_10_5
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2018-09-09
Jim Procter
JAL-3106 normalise extension before checking if it...
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2018-09-07
Jim Procter
JAL-3107 update any group associated annotation rows...
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2018-09-07
Jim Procter
JAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5...
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2018-09-07
Jim Procter
JAL-2988 if selected file is null (On Java 10/OSX ...
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2018-09-07
Jim Procter
JAL-2988 workaround: overload getSelectedFile() because...
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2018-09-07
Jim Procter
JAL-3106 use .jvp as default
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2018-09-07
Jim Procter
JAL-3105 fix for focus transfer after window closed...
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2018-09-06
Jim Procter
JAL-3091 code committed in error (failed patch for...
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2018-09-06
Jim Procter
JAL-3091 release notes for JAL-3104
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2018-09-06
Jim Procter
JAL-3105 reallocate quality and consensus annotation...
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