source.jalview.org Git - jalview.git/shortlog

git://source.jalview.org / jalview.git / shortlog

2007-01-26	amwaterhouse	Only set the sequence oncecvs diff datamodel/Alignment...	commit \| commitdiff \| tree \| snapshot
2007-01-26	amwaterhouse	Adjusts annotations for sequence edits	commit \| commitdiff \| tree \| snapshot
2007-01-26	amwaterhouse	If its null, set tip empty	commit \| commitdiff \| tree \| snapshot
2007-01-26	jprocter	preliminary documentation for DNA->protein codon featur...	commit \| commitdiff \| tree \| snapshot
2007-01-26	jprocter	added doc for PDBResNum features	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Command takes alignment, not gapChar	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Annotations move when full alignment edited	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Annotation adjustment moved to EditCommand	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Remove unneccessary lines	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	AlignmentAnnotations require id	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Allow for hidden columns	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Only output visible annotations	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	load/get Annotation	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Remove unnecessary line	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	Output annotations	commit \| commitdiff \| tree \| snapshot
2007-01-25	amwaterhouse	1.1 enabled	commit \| commitdiff \| tree \| snapshot
2007-01-25	jprocter	reinstating class implementation.	commit \| commitdiff \| tree \| snapshot
2007-01-25	jprocter	checks for irreflexive mapping in main tester	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	Conservation etc have autoCalculated flag set true	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	AdjustAnnotations needs position, number and insert	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	This constructor is never called	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	Features output for javascript	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	output now takes alignment, not just sequences	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	Extension to fastaFile for myhits	commit \| commitdiff \| tree \| snapshot
2007-01-24	jprocter	refactored to use jalview.analysis.Finder for searching...	commit \| commitdiff \| tree \| snapshot
2007-01-24	jprocter	kkv change	commit \| commitdiff \| tree \| snapshot
2007-01-24	jprocter	Map arbitrary series of non-overlapping integer interva...	commit \| commitdiff \| tree \| snapshot
2007-01-24	amwaterhouse	Page setup added	commit \| commitdiff \| tree \| snapshot
2007-01-23	amwaterhouse	boolean for internal copies	commit \| commitdiff \| tree \| snapshot
2007-01-23	amwaterhouse	Hidden representatives moved from sequence to viewport	commit \| commitdiff \| tree \| snapshot
2007-01-23	jprocter	refactoring (added seqIndex/resIndex state for incremen...	commit \| commitdiff \| tree \| snapshot
2007-01-23	jprocter	refactored search algorithm from gui classes	commit \| commitdiff \| tree \| snapshot
2007-01-23	jprocter	transfer resnum features now returns features (could...	commit \| commitdiff \| tree \| snapshot
2007-01-19	jprocter	reoganization of PDB sequence fetching for sequence...	commit \| commitdiff \| tree \| snapshot
2007-01-19	jprocter	PDBChain maintains reference to dataset of sequences...	commit \| commitdiff \| tree \| snapshot
2007-01-19	jprocter	datasetSequence derive method and some checks	commit \| commitdiff \| tree \| snapshot
2007-01-19	amwaterhouse	export features/annotations not for import	commit \| commitdiff \| tree \| snapshot
2007-01-19	amwaterhouse	Applet can output and load annotations, features	commit \| commitdiff \| tree \| snapshot
2007-01-19	amwaterhouse	Neeed to know protocol for annotation loading	commit \| commitdiff \| tree \| snapshot
2007-01-19	amwaterhouse	Need to know protocol to load anntotations	commit \| commitdiff \| tree \| snapshot
2007-01-19	jprocter	javadoc	commit \| commitdiff \| tree \| snapshot
2007-01-19	jprocter	added sequence feature copy constructor.	commit \| commitdiff \| tree \| snapshot
2007-01-18	jprocter	transfer and update of sequenceFeatures for associated...	commit \| commitdiff \| tree \| snapshot
2007-01-18	jprocter	random ';'	commit \| commitdiff \| tree \| snapshot
2007-01-18	jprocter	transfer and update of sequenceFeatures for associated...	commit \| commitdiff \| tree \| snapshot
2007-01-18	jprocter	fixed last-residue bug and added sequence feature creat...	commit \| commitdiff \| tree \| snapshot
2007-01-18	jprocter	added resNum+insCode string field for truly unambiguous...	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Add the last sequence before annotations	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Take scrollOffset into account	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Tool tip for annotation description	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Set description on copy	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Set tooltip	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	1.1 enabled	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	put vamsas bit back in	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	File Parsing returns Alignments, not Sequence[]	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Is secondary structure label modified	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Display description	commit \| commitdiff \| tree \| snapshot
2007-01-18	amwaterhouse	Descriptions can be added to annotations	commit \| commitdiff \| tree \| snapshot
2007-01-17	amwaterhouse	Edit name/description added to applet	commit \| commitdiff \| tree \| snapshot
2007-01-17	amwaterhouse	Fit to Window bug fixed	commit \| commitdiff \| tree \| snapshot
2007-01-17	jprocter	made atom attributes public (rather than put in get...	commit \| commitdiff \| tree \| snapshot
2007-01-17	amwaterhouse	Dont set the font of alignFrameMenubarcvs update applet...	commit \| commitdiff \| tree \| snapshot
2007-01-04	amwaterhouse	Send new sequences when firing alignment changed	commit \| commitdiff \| tree \| snapshot
2007-01-04	amwaterhouse	Reads in anything following seq id as a description	commit \| commitdiff \| tree \| snapshot
2007-01-04	amwaterhouse	HEADER and ATOM must be position 0	commit \| commitdiff \| tree \| snapshot
2006-12-21	jprocter	type change	commit \| commitdiff \| tree \| snapshot
2006-12-21	jprocter	description from vamsas sequence and file type change	commit \| commitdiff \| tree \| snapshot
2006-12-21	amwaterhouse	check on sequence length	commit \| commitdiff \| tree \| snapshot
2006-12-21	amwaterhouse	getSequenceAsString	commit \| commitdiff \| tree \| snapshot
2006-12-21	amwaterhouse	getSequenceAsString	commit \| commitdiff \| tree \| snapshot
2006-12-21	amwaterhouse	remove unnecessary import	commit \| commitdiff \| tree \| snapshot
2006-12-21	jprocter	type change	commit \| commitdiff \| tree \| snapshot
2006-12-19	amwaterhouse	org.vamsas is now uk.ac.vamsas	commit \| commitdiff \| tree \| snapshot
2006-12-19	amwaterhouse	description may be null	commit \| commitdiff \| tree \| snapshot
2006-12-14	amwaterhouse	set sequence_ref alignment	commit \| commitdiff \| tree \| snapshot
2006-12-14	amwaterhouse	Watch out for - symbol lin jnet files	commit \| commitdiff \| tree \| snapshot
2006-12-14	amwaterhouse	Are the labels all secondary Strutures? are the display...	commit \| commitdiff \| tree \| snapshot
2006-12-14	amwaterhouse	one less cast	commit \| commitdiff \| tree \| snapshot
2006-12-11	jprocter	fixed introduced bug (doh)	commit \| commitdiff \| tree \| snapshot
2006-12-11	jprocter	clarified help documentation for annotation file format...	commit \| commitdiff \| tree \| snapshot
2006-12-11	amwaterhouse	ensure lastSeq is refreshed if new feature added	commit \| commitdiff \| tree \| snapshot
2006-12-07	amwaterhouse	set labels null if not being used	commit \| commitdiff \| tree \| snapshot
2006-12-07	amwaterhouse	dont add char[] ref to a string	commit \| commitdiff \| tree \| snapshot
2006-12-06	jprocter	type change	commit \| commitdiff \| tree \| snapshot
2006-12-06	jprocter	typo fix.	commit \| commitdiff \| tree \| snapshot
2006-12-06	jprocter	general pairwise substitution score models for pairwise...	commit \| commitdiff \| tree \| snapshot
2006-12-06	amwaterhouse	protected ok	commit \| commitdiff \| tree \| snapshot
2006-12-06	amwaterhouse	Change text of ok if viewport not null	commit \| commitdiff \| tree \| snapshot
2006-12-06	amwaterhouse	textfield has focus	commit \| commitdiff \| tree \| snapshot
2006-12-05	amwaterhouse	Set startRes 0 for switch to wrap view	commit \| commitdiff \| tree \| snapshot
2006-12-05	amwaterhouse	sequence is char []	commit \| commitdiff \| tree \| snapshot
2006-12-05	amwaterhouse	Sequence is char []	commit \| commitdiff \| tree \| snapshot
2006-12-04	jprocter	random notes on putting a Groovy interpreter into Jalview.	commit \| commitdiff \| tree \| snapshot
2006-11-30	amwaterhouse	indexOf replaces contains	commit \| commitdiff \| tree \| snapshot
2006-11-30	amwaterhouse	char array replaces string for cuts	commit \| commitdiff \| tree \| snapshot
2006-11-30	amwaterhouse	DasRegistry moved again	commit \| commitdiff \| tree \| snapshot
2006-11-30	amwaterhouse	sg might be null if mouse released after coloumns removed	commit \| commitdiff \| tree \| snapshot
2006-11-30	amwaterhouse	Return true or false if file saved	commit \| commitdiff \| tree \| snapshot
2006-11-30	amwaterhouse	Warning message if file was not saved, repaint ids...	commit \| commitdiff \| tree \| snapshot
2006-11-30	jprocter	fix bad grammar in new alignment title	commit \| commitdiff \| tree \| snapshot
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