indexOf replaces contains

diff --git a/src/jalview/ws/MsaWSClient.java b/src/jalview/ws/MsaWSClient.java
index 324f495..c159a94 100755 (executable)
--- a/src/jalview/ws/MsaWSClient.java
+++ b/src/jalview/ws/MsaWSClient.java
@@ -99,9 +99,9 @@ public class MsaWSClient
                            " of " + altitle + "\nJob details\n");
     String jobtitle = WebServiceName.toLowerCase();
     if (jobtitle.endsWith("alignment")) {
-        if (submitGaps 
-                && (!jobtitle.endsWith("realignment") 
-                || !jobtitle.contains("profile"))) {
+        if (submitGaps
+                && (!jobtitle.endsWith("realignment")
+                ||   jobtitle.indexOf("profile")==-1)) {
             int pos=jobtitle.indexOf("alignment");
             jobtitle = WebServiceName.substring(0, pos) + "re-alignment of "+altitle;
         } else {
@@ -110,7 +110,7 @@ public class MsaWSClient
     } else {
         jobtitle = WebServiceName+(submitGaps? " re" : " ") +"alignment of "+altitle;
     }
-    
+
     MsaWSThread msathread = new MsaWSThread(server, WsURL, wsInfo, alignFrame,
                                                WebServiceName,
                                                jobtitle,