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2015-09-16 gmungocJAL-1859 refactor addProtocol, setProtocolState as... commit | commitdiff | tree | snapshot
2015-09-16 gmungocJAL-1859 temporary debug output commit | commitdiff | tree | snapshot
2015-09-15 gmungocJAL-1859 use unresolved PDB filename commit | commitdiff | tree | snapshot
2015-09-15 gmungocJAL-1859 strip file name from applet documentbase commit | commitdiff | tree | snapshot
2015-09-15 gmungocJAL-1859 refactoring / debugging added commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1865 fixed so initial state of annotation sort... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1851 add retrieved sequence's start (-1) to match... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1880 updated mapping tests to ensure they handle... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1270 test added for separatorListToArray commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1880 handle sequence offsets properly when mapping... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1684 align added alignment to match original in... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1684 align added alignment to match original in... commit | commitdiff | tree | snapshot
2015-09-14 gmungocJAL-1684 ensure cDNA placed above protein in SplitFrame commit | commitdiff | tree | snapshot
2015-09-11 Jim ProcterJAL-1884 add the JNLP template to jalview_jnlp_vm.jar commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 fix broken link in docs commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 reformat help html - 2 spaces indents, no... commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for help html commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for doc directory files commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for groovy files commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for new files in test and utils commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 licencing for new files in src commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 source formatting and organise imports commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1684 updated example to just a fragment of the... commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 add reference seq docs to index/etc commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 formatting and updated release date commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 formatting commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-736 JAL-1645 brief documentation about physicochemi... commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 typo commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 JAL-1595 sort by RNA helices docs commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 more cross-links and fixing menu entries commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 links from whats New page commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1645 yet more documentation tweaks commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1370 correct i18n message for reference sequence... commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1370 detect any type of gap character in reference... commit | commitdiff | tree | snapshot
2015-09-10 Jim ProcterJAL-1370 mark Jpred query sequence as reference sequence commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 rejig annotation selection dialog box commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 rejig biojson/biojsmsa docs commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 documentation tweaks commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 rejig bioJSON, export and whats new commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 relocate developer info about BioJS MSA templa... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 update 2.9 docs commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 JAL-1667 revised PDB sequence fetcher docs commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 update TOC for 2.9 what’s new commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 update release note link to v2.9 commit | commitdiff | tree | snapshot
2015-09-09 gmungocJAL-857 debug=true for Jmol example diagnosis commit | commitdiff | tree | snapshot
2015-09-09 gmungocJAL-857 added debug output to track down document base... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1684 use Muscle protein alignment as guide for... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterMerge branch 'release/2_9_documentation' into develop commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1684 clarification of which alignment will be used... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1684 aligned proteins and citation for for Estrogen... commit | commitdiff | tree | snapshot
2015-09-09 gmungocJAL-1619 update applet.currentAlignFrame on any menu... commit | commitdiff | tree | snapshot
2015-09-09 gmungocJAL-1619 'align protein as cDNA' now leaves unmapped... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1645 formatting tree distance docs commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1483 more explicit description of feature similarit... commit | commitdiff | tree | snapshot
2015-09-09 Jim ProcterJAL-1483 description of the sequence feature based... commit | commitdiff | tree | snapshot
2015-09-09 tcofoegbuhouse keeping commit | commitdiff | tree | snapshot
2015-09-09 tcofoegbuupdated Biojs msa help doc commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-1541 doc for biojs msa commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 Merge branch 'release/2_9_documentation' into... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 defictionalising release notes commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 first stab at R2.9 “What’s new” commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 JAL-1701 fix up split frame docs and add a... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 incorrect internal doc link commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 update appletParameters docs for 2.9 commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1695 make enableSplitFrame applet parameter true... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated biojson help content commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated helpTOC to include recently added features... commit | commitdiff | tree | snapshot
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 debug output of pdb mappings (mine and SSMs) commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1626 added missing gap character and fixed typo... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuupdated help to include BioJS option in export.html commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1551 crlf change commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbucommited jmol/Jmol2.js diff with origin shows no change... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-857 revert show equivalent decoration link commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbuJAL-857 removed 'development' as active link and added... commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterMerge branch 'develop' into release/2_9_documentation commit | commitdiff | tree | snapshot
2015-09-08 Jim ProcterJAL-1645 draft release notes for v2.9... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 reverted to signed JalviewApplet.jar! commit | commitdiff | tree | snapshot
2015-09-08 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-08 gmungocJAL-1859 Jmol applet black background; fix _jvmols... commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-08 tcofoegbudeleted jbake example directory and the old biojs templ... commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1859 Jmol linked applet updated to use Jmol2.js commit | commitdiff | tree | snapshot
2015-09-07 Jim ProcterMerge branch 'features/JAL-857_dynamic-example-files... commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1636 translate stop codon as '*', mouseover * as... commit | commitdiff | tree | snapshot
2015-09-07 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbumerge commit | commitdiff | tree | snapshot
2015-09-07 tcofoegbuJAL-1831 updated BioJSON schema commit | commitdiff | tree | snapshot
2015-09-07 gmungocJAL-1152 check 'autocalculated' not 'null sequenceRef... commit | commitdiff | tree | snapshot
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