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jalview.git
2019-04-16 Jim ProcterJAL-3130 JAL-1889 report absolute paths for CommandLine... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-3196 change default are resource properties to... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterReinstate imports from "JAL-1889 JAL-3130 patch broken... commit | commitdiff | tree | snapshot
2019-04-16 Jim ProcterJAL-1189 JAL-3130 patch broken tests commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Somewhere in the old libs the Jws2 client... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 Helper classes to take Class Exceptions when... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 some clover fixes for helplinks. Use 'gradle... commit | commitdiff | tree | snapshot
2019-04-15 Ben SoaresJAL-3130 adapted getdown src. attempt 2. first attempt... commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 write clover.xml during cloverReport phase commit | commitdiff | tree | snapshot
2019-04-14 Jim ProcterJAL-3130 make sure testng-results.xml is generated commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 specify module list when launching new Jalview... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 instrument main and compile separately to... commit | commitdiff | tree | snapshot
2019-04-12 Jim ProcterJAL-3130 gradle test now runs open clover 4.3.1 and... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterMerge branch 'develop' into task/JAL-3130_Java_11_inves... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 ensure J11 libs/modules are added when buildin... commit | commitdiff | tree | snapshot
2019-04-11 Jim ProcterJAL-3130 clean up eclipse class path for dependencies... commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3193 rest.ensemblgenomes.org merged to rest.ensembl.org commit | commitdiff | tree | snapshot
2019-04-10 gmungocJAL-3018 REST version updated to 10.0 commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 adapted getdown src commit | commitdiff | tree | snapshot
2019-04-05 Ben SoaresJAL-3130 This commit concentrates on the Mac OS X DMG... commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 trying to be Java 1.8 source compatible -... commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 JAL-3007 more files needed for getdown launcher commit | commitdiff | tree | snapshot
2019-04-04 Ben SoaresJAL-3130 JAL-3007 improvements to gradle build commit | commitdiff | tree | snapshot
2019-04-03 gmungocJAL-3021 show Sequence Details with cursor at top commit | commitdiff | tree | snapshot
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11. Now... commit | commitdiff | tree | snapshot
2019-04-01 Ben SoaresJAL-3130 JAL-3007 Added gradle build for Java 11 and... commit | commitdiff | tree | snapshot
2019-03-29 gmungocJAL-3140 InstallAnywhere updated to intervalstore-v1... commit | commitdiff | tree | snapshot
2019-03-29 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-03-29 gmungocJAL-3140 intervalstore now v1.0 (public release) commit | commitdiff | tree | snapshot
2019-03-29 Jim ProcterJAL-3111 Disable the pubapplet target in build.xml... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterMerge branch 'develop' of source.jalview.org/git/jalvie... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 biojava dependencies commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 fix libquagua dependency paths - needs to... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 fix jabaws dependency name in IA config commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 intervalstore library on IA classpath commit | commitdiff | tree | snapshot
2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 typo in IA config commit | commitdiff | tree | snapshot
2019-03-28 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2019-03-28 gmungocJAL-1889 patch for failing isControDown test on build... commit | commitdiff | tree | snapshot
2019-03-28 Jim ProcterJAL-3111 update InstallAnywhere dependencies for change... commit | commitdiff | tree | snapshot
2019-03-28 gmungocMerge branch 'feature/JAL-3181linkOrdering' into develop commit | commitdiff | tree | snapshot
2019-03-27 gmungocJAL-2620 improved error reporting on failure to load... commit | commitdiff | tree | snapshot
2019-03-25 gmungocJAL-2717 adjusted code so default correctly returned... commit | commitdiff | tree | snapshot
2019-03-25 gmungocJAL-3127 scripts updated for method signature change commit | commitdiff | tree | snapshot
2019-03-23 gmungocJAL-1889 explicit recalc of geometry for scale left... bug/JAL-1889serverTestSuite commit | commitdiff | tree | snapshot
2019-03-23 gmungocJAL-1889 remove debug logging, add updateLayout() commit | commitdiff | tree | snapshot
2019-03-22 Ben SoaresJAL-3130 adding two more modules picked up by gradle... commit | commitdiff | tree | snapshot
2019-03-22 Ben SoaresJAL-3130 mark some deprecated methods in Regex as ... commit | commitdiff | tree | snapshot
2019-03-22 gmungocJAL-1889 more debug logging commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 better debug logging commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 temporary debug in findColumn() commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 added belt and braces deleteOnExit() to test... commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 correct props param, remove dasserver, output... commit | commitdiff | tree | snapshot
2019-03-21 Ben SoaresJAL-3130 Replaced deprecated Class.newInstance() with... commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 more diagnostics for CommandLineOperations commit | commitdiff | tree | snapshot
2019-03-21 gmungocJAL-1889 diagnostics for failing test on server commit | commitdiff | tree | snapshot
2019-03-20 Ben SoaresJAL-3130 Lots of deprecation fixes. See utils/deprecat... commit | commitdiff | tree | snapshot
2019-03-20 gmungocJAL-3093 fine tuning of SeqPanel tooltip commit | commitdiff | tree | snapshot
2019-03-20 gmungocJAL-3212 unit test and fix for Scale Panel bug commit | commitdiff | tree | snapshot
2019-03-19 Ben SoaresJAL-3130 remove some comments on quit. fix modules... commit | commitdiff | tree | snapshot
2019-03-19 Ben SoaresJAL-3130 Merge of JAL-3130_Java_11_investigations-Ben... commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 removing no longer needed JRE (going to use... commit | commitdiff | tree | snapshot
2019-03-18 Ben SoaresJAL-3130 Removing accidentally committed tmp dir commit | commitdiff | tree | snapshot
2019-03-15 gmungocJAL-2964 missed branch for restore link tree to all... commit | commitdiff | tree | snapshot
2019-03-15 gmungocJAL-3203 Overview show hidden default false also in... commit | commitdiff | tree | snapshot
2019-03-12 gmungocJAL-1270 missing 'alwaysRun=true' added to setup/teardown commit | commitdiff | tree | snapshot
2019-03-12 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff | tree | snapshot
2019-03-12 gmungocJAL-3127 check for null viewport feature/JAL-3127_seqidChainshading commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-1270 JAL-2416 JAL-2839 set alwaysRun=true in test... commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-3127 fix faulty merge commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'develop' into merge/JAL-3127 commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'feature/JAL-2250colourAllGroups' into... commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-3201 restore group colours correctly from project feature/JAL-2250colourAllGroups commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'feature/JAL-3127_seqidChainshading' into... commit | commitdiff | tree | snapshot
2019-03-11 gmungocJAL-3206 strict above/below threshold test restored commit | commitdiff | tree | snapshot
2019-03-11 gmungocMerge branch 'bug/JAL-3075' into develop commit | commitdiff | tree | snapshot
2019-03-08 gmungocJAL-3193 defensive trim of URL read from properties... commit | commitdiff | tree | snapshot
2019-03-08 gmungocJAL-2903 typos fixed commit | commitdiff | tree | snapshot
2019-03-08 gmungocJAL-3075 update column selection on mouse up after... bug/JAL-3075 commit | commitdiff | tree | snapshot
2019-03-07 gmungocMerge branch 'feature/JAL-3180colourAnnotationMenu... commit | commitdiff | tree | snapshot
2019-03-07 Ben SoaresJAL-3130 deprecation change preparation commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-2250 default Apply Colour to All Groups selected commit | commitdiff | tree | snapshot
2019-03-07 Jim ProcterJAL-3127 set ‘updateStructures’ flag for viewports... commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-2717 JAL-2360 belated unit tests for ColourMenuHelper commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-2717 corrected i18n of colour scheme names commit | commitdiff | tree | snapshot
2019-03-07 gmungocMerge branch 'feature/JAL-3205symmetricCalc' into develop commit | commitdiff | tree | snapshot
2019-03-07 gmungocJAL-3035 removed spring libraries as only used for... commit | commitdiff | tree | snapshot
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff | tree | snapshot
2019-03-06 gmungocJAL-3035 restored erroneous deletion tasks/JAL-3035_remove_dasobert_dependency commit | commitdiff | tree | snapshot
2019-03-06 gmungocMerge branch 'tasks/JAL-3035_remove_dasobert_dependency... commit | commitdiff | tree | snapshot
2019-03-06 gmungocJAL-3035 more das bits removed commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge branch 'bug/JAL-3201groupClustal' into develop commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2620a... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge branch 'bug/JAL-2621' into develop commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-3141_Messa... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-2839findWi... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/bug/JAL-914multipl... commit | commitdiff | tree | snapshot
2019-03-05 gmungocMerge remote-tracking branch 'origin/features/JAL-2814f... commit | commitdiff | tree | snapshot
2019-03-05 Ben SoaresJAL-3141 Fixed inconsistent (changed) message labels... bug/JAL-3141_Messages_discrepancy_fix commit | commitdiff | tree | snapshot
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