JAL-3127 scripts updated for method signature change

diff --git a/examples/groovy/colourConserved.groovy b/examples/groovy/colourConserved.groovy
index 35c54d5..5fc2ad1 100644 (file)
--- a/examples/groovy/colourConserved.groovy
+++ b/examples/groovy/colourConserved.groovy
@@ -43,7 +43,7 @@ conserved = { ->
     /*
      * to make a new instance for each alignment view
      */
-    getInstance: { AlignViewportI view, AnnotatedCollectionI coll, Map<SequenceI, SequenceCollectionI> map -> conserved() },
+    getInstance: { AlignViewportI view, AnnotatedCollectionI coll -> conserved() },
     
     /*
      * method only needed if colour scheme has to recalculate

diff --git a/examples/groovy/colourSchemes.groovy b/examples/groovy/colourSchemes.groovy
index 3f1f953..eb40cc6 100644 (file)
--- a/examples/groovy/colourSchemes.groovy
+++ b/examples/groovy/colourSchemes.groovy
@@ -26,7 +26,7 @@ candy = { ->
     /*
      * to make a new instance for each alignment view
      */
-    getInstance: { AlignViewportI view, AnnotatedCollectionI coll, Map<SequenceI, SequenceCollectionI> map -> candy() },
+    getInstance: { view, coll -> candy() },
     
     /*
      * method only needed if colour scheme has to recalculate
@@ -86,7 +86,7 @@ byWeight = { ->
     // this colour scheme is peptide-specific:
     isApplicableTo: { coll -> !coll.isNucleotide() },
     alignmentChanged: { coll, map -> },
-    getInstance: { coll, map -> byWeight() },
+    getInstance: { view, coll -> byWeight() },
     isSimple: { true },
     findColour: {res, col, seq, consensus, pid -> 
         switch (res) {

diff --git a/examples/groovy/colourUnconserved.groovy b/examples/groovy/colourUnconserved.groovy
index e186766..2365c1e 100644 (file)
--- a/examples/groovy/colourUnconserved.groovy
+++ b/examples/groovy/colourUnconserved.groovy
@@ -42,7 +42,7 @@ unconserved = { ->
     /*
      * to make a new instance for each alignment view
      */
-    getInstance: { AnnotatedCollectionI coll, Map<SequenceI, SequenceCollectionI> map -> unconserved() },
+    getInstance: { view, coll -> unconserved() },
     
     /*
      * method only needed if colour scheme has to recalculate