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jalview.git
2009-06-19
jprocter
debug and cyclefix for dbrefs with embedded sequences
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2009-06-19
jprocter
javadoc and datastoreitem registry support for binding...
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2009-06-19
jprocter
more efficient synchronized methods
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2009-06-19
jprocter
bugfix mapped reference transfer and made picr ID retri...
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2009-06-19
jprocter
selection handler and sender bugfix
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2009-06-19
jprocter
todo
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2009-06-19
jprocter
selections sent when mouse is released (drags on ID...
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2009-06-19
jprocter
progress bars (still need to be threaded properly)...
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2009-06-19
jprocter
smoother scroll-to-position action
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2009-06-19
jprocter
drag'n'drop a URL on to an alignment
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2009-06-19
jprocter
parent db references and mappings added to retrieved...
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2009-06-19
jprocter
intersect did not intersect (used in selection listener)
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2009-06-19
jprocter
regex validator for uniprot
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2009-06-19
jprocter
usepicr config property
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2009-06-19
jprocter
debug
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2009-06-19
jprocter
debug comments
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2009-06-19
jprocter
new coverage comparison - no test case in main method yet
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2009-06-12
jprocter
updated Iclientfactory interface, XMl viewer tests...
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2009-06-12
jprocter
synching of all db references and sequence features
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2009-06-12
jprocter
prevent dbref->map->to->datasetsequence->dbref-> type...
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2009-06-12
jprocter
reinstate links on features
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2009-06-12
jprocter
datastore registration and class cast exception fix
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2009-06-12
jprocter
prevent and keep track of which objects handling elemen...
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2009-06-12
jprocter
numerous bugfixs (tree panel synchs) and DatastoreRegis...
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2009-06-12
jprocter
methods for importing anonymous vamsas documents into...
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2009-06-12
jprocter
nullpointer bugfix (possibly not needed - was an error...
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2009-06-12
jprocter
recover pdb from jalview-xml in vamsas doc
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2009-06-12
jprocter
send selection on drag over sequence ids
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2009-06-12
jprocter
retrieve and init vamsas session from vdoc at URL
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2009-06-12
jprocter
reinstated blind querying of datasources. Transfer...
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2009-06-12
jprocter
more ID validation
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2009-06-12
jprocter
javadoc
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2009-06-10
jprocter
com.boxysystems.jgogleanalytics is now an optional...
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2009-06-09
jprocter
fix null pointer when new view is created then closed...
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2009-06-09
jprocter
fix null pointer when new view created on alignment...
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2009-06-08
jprocter
use structured UA naming for googleanalytics client
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2009-06-08
jprocter
upgrade to simple vamsas client version 0.2 (not runtim...
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2009-06-08
jprocter
trial of jGA with proper useragent info
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2009-06-08
jprocter
*experimental use of picr* apply gpl development license
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2009-06-08
jprocter
clargs documentation, new vamsas session import and...
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2009-06-08
jprocter
refactored public methods for non-interactive import...
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2009-06-08
jprocter
refactored for non-interactive import and initiation...
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2009-06-08
jprocter
sequence scores only shown if they vary. shift stops...
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2009-06-08
jprocter
debug messages and graceful recovery when structure...
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2009-06-08
jprocter
better thread safety for tooltip. apply gpl development...
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2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
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2009-06-08
jprocter
ensure listeners are deregistered when panel is closed...
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2009-06-08
jprocter
ga tracker option and apply gpl development license
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2009-06-08
jprocter
apply gpl development license
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2009-06-08
jprocter
minor optimization. apply gpl development license
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2009-06-08
jprocter
patch for wierd format header lines and apply gpl devel...
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2009-06-08
jprocter
ga in 2.4.0b2 release
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2009-06-08
jprocter
nousagestats cli
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2009-06-08
jprocter
apply gpl development license and new donotobfuscate...
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2009-06-04
jprocter
full reference added.
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2009-06-04
jprocter
spelling
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2009-06-04
jprocter
script goes at beginning of body to allow linkthrus...
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2009-06-02
jprocter
update minor version of release branch
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2009-06-01
jprocter
graduated feature colour documentation
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2009-06-01
jprocter
GA appender script
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2009-06-01
jprocter
google tracking for index document
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2009-06-01
jprocter
more graduated feature support
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2009-06-01
jprocter
properly export graduated colour features
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2009-06-01
jprocter
prototype function for relabelling treenodes with diffe...
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2009-06-01
jprocter
better tooltip placement in alignment window
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2009-06-01
jprocter
added graduated colourscheme support for feature file
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2009-06-01
jprocter
better decoupling of data loading routines for AJAX
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2009-06-01
jprocter
first experiment with GA application use tracking
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2009-06-01
jprocter
look in database references for more ID strings to...
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2009-06-01
jprocter
apply method for a NodeTransform to nodes in a tree
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2009-06-01
jprocter
javadoc
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2009-06-01
jprocter
only make a link menu when there are links
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2009-06-01
jprocter
maxcolour is default colour for no-score features
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2009-04-14
jprocter
bugfix autobuild of release branch
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2009-04-14
jprocter
bugfix autobuild of release branch
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2009-04-14
jprocter
patch to fix occasional arrayoutofbounds exception...
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2009-04-07
jprocter
documented fix to sequencefetcher for multiple ID retrieval
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2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
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2009-04-04
jprocter
rejigged jmol check thread to run prior to data loading...
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2009-03-31
jprocter
note on new popup menu in feature settings dialog
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2009-03-31
jprocter
added feature gradient colours and sortby feature score...
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2009-03-31
jprocter
prototype for store/restore of feature colour gradient...
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2009-03-31
jprocter
todo
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2009-03-17
jprocter
allow configuration of graduated colour
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2009-03-17
jprocter
quantitative shading of features by GraduatedColor
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2009-03-17
jprocter
prototype dialog for setting feature display shading...
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2009-03-17
jprocter
holds shading and range parameters rendering a feature...
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2009-03-17
jprocter
sortbytree view setting and action added - setting...
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2009-03-17
jprocter
sortbytree/nosortbytree and defprop arguments. (defprop...
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2009-03-17
jprocter
new sortbytree default config property
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2009-03-17
jprocter
sortbytree parameter added and undo re-instated for...
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2009-03-17
jprocter
fixes launchApp bug where user defined colourscheme...
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2009-02-24
jprocter
better tooltip display and placement, cope with linkOnl...
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2009-02-24
jprocter
debugging selection message send/receive
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2009-02-24
jprocter
only display unique url links (both in label and in...
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2009-02-24
jprocter
bugfix for occasional nullpointer exceptions when selec...
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2009-02-24
jprocter
change method signature to allow caller to test if...
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2009-02-24
jprocter
bugfix the bugfix
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2009-02-24
jprocter
allow label to be set independently of parsed input...
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2009-02-24
jprocter
bug fixes (infinite loop when fetcher given same sequen...
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