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jalview.git
2017-03-29 kiramtJAL-2388 New iterators and tests commit | commitdiff | tree | snapshot
2017-03-24 kiramtJAL-2388 Removing AlignmentPanel dependency (mostly) commit | commitdiff | tree | snapshot
2017-03-23 kiramtJAL-2388 Factored out applet overview canvas, threading... commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2388 Rationalised overview panel drawing thread commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2388 Reinstated original overview checks for annota... commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch bug/JAL-2436featureRendererThreading commit | commitdiff | tree | snapshot
2017-03-22 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-03-22 gmungocJAL-2311 suppress autocalc'd annotation to isolate... commit | commitdiff | tree | snapshot
2017-03-22 kiramtJAL-2388 Minor changes to thread flags commit | commitdiff | tree | snapshot
2017-03-21 kiramtJAL-2307 Fixed SiftsClient unit test commit | commitdiff | tree | snapshot
2017-03-21 kiramtJAL-2388 Unpleasant but operational refactor into Overv... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2306 assert no DAS sources commit | commitdiff | tree | snapshot
2017-03-21 kiramtJAL-2388 Made ViewportRanges final commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2438 removed (non-functional) lastSeq, lastSequence... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2243 update discovered features on opening structur... commit | commitdiff | tree | snapshot
2017-03-21 gmungocJAL-2438 check for null FeatureRenderer commit | commitdiff | tree | snapshot
2017-03-21 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-03-20 Jim ProcterMerge branch 'bug/JAL-2421overviewboxflicker' into... commit | commitdiff | tree | snapshot
2017-03-20 kiramtJAL-2388 Comment typo commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 ViewportRanges unit test commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2437 Synchronization corrections and unit tests commit | commitdiff | tree | snapshot
2017-03-17 kiramtJAL-2388 Renamed column and row subtraction functions commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterMerge branch 'merges/develop_JAL2295setChimeraAttribute... commit | commitdiff | tree | snapshot
2017-03-16 Jim ProcterJAL-1933 refactor parameter for code clarity commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applied ViewportRanges to code commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Renamed viewport position props to viewport... commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Unit test update commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2388 Applet update for overview panel commit | commitdiff | tree | snapshot
2017-03-16 kiramtJAL-2439 Out-by-one in setting endRes/endSeq commit | commitdiff | tree | snapshot
2017-03-15 kiramtJAL-2388 Unit tests and tidies commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2443 push getResidueBoxColour inside getResidueColour commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 corrected getFeatureRenderer() commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2442 applet feature transparency also on overview... commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 handle null FeatureRenderer in FeatureColourFinder commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 refactored checks for 'no features displayed' commit | commitdiff | tree | snapshot
2017-03-15 gmungocJAL-2438 clarify code and javadoc, reinstate updateFeat... commit | commitdiff | tree | snapshot
2017-03-15 gmungocMerge branch 'develop' into bug/JAL-2436featureRenderer... commit | commitdiff | tree | snapshot
2017-03-15 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 Working overview panel commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2439 Fixes to out-by-one sequence indexing in gui... commit | commitdiff | tree | snapshot
2017-03-14 kiramtJAL-2388 New hidden cols/seqs functions to support... commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 unit test, fixes, Javadoc updates commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 unit tests for FeatureColourFinder (transparen... commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 Javadoc updates commit | commitdiff | tree | snapshot
2017-03-14 gmungocJAL-2438 comment/Javadoc tidies commit | commitdiff | tree | snapshot
2017-03-13 gmungocJAL-2438 corrected handling of default colour commit | commitdiff | tree | snapshot
2017-03-13 gmungocJAL-2438 FeatureColourFinder refactored from FeatureRen... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2437 Fixed reordering of sequences when hiding... commit | commitdiff | tree | snapshot
2017-03-10 kiramtJAL-2388 Moving some alignment panel logic into overvie... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-03-09 kiramtJAL-2388 Minor fix for annotation graph, removed unit... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2430 colour columns hidden in alignment gray on... commit | commitdiff | tree | snapshot
2017-03-08 gmungocJAL-2295 avoid quotes breaking attribute value parsing commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Fixed inherited&new out-by-one errors; further... commit | commitdiff | tree | snapshot
2017-03-07 gmungocJAL-2295 status messages for Chimera attributes set... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Additional unit tests commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2388 Missed commit commit | commitdiff | tree | snapshot
2017-03-07 kiramtMerge remote-tracking branch 'origin/develop' into... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 Messed something up, merged conflicts commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 findColumnPosition returns 0 for cols in regio... commit | commitdiff | tree | snapshot
2017-03-07 kiramtJAL-2429 Additional fix to ColumnSelection when hidden... commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Dependency tidy commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Remove OverviewDimensions dependency on gui... commit | commitdiff | tree | snapshot
2017-03-06 kiramtJAL-2388 Corrected overview panel behaviour, updated... commit | commitdiff | tree | snapshot
2017-03-03 kiramtJAL-2429 Fix to ColumnSelection::findColumnPosition commit | commitdiff | tree | snapshot
2017-03-03 kiramtJAL-2388 Initial removal of hidden cols/seqs out of... commit | commitdiff | tree | snapshot
2017-03-02 gmungocJAL-2295 tweak order and wording of Superpose menu... commit | commitdiff | tree | snapshot
2017-03-02 gmungocJAL-2295 make 'Jmol' menu appear; enable/disable Superp... commit | commitdiff | tree | snapshot
2017-03-01 kiramtJAL-2388 Reverted to previous commit | commitdiff | tree | snapshot
2017-03-01 gmungocJAL-1264 smarter way to skip autocalc'd annotations... commit | commitdiff | tree | snapshot
2017-03-01 gmungocMerge branch 'features/JAL-2295setChimeraAttributes... commit | commitdiff | tree | snapshot
2017-03-01 kiramtJAL-2388 Preliminary refactor check-in, does not compile commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2426 Removal of NPE in conservation thread when... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2388 Removing sources of non-determinism in unit... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2388 First move of endRes etc out of AlignmentViewp... commit | commitdiff | tree | snapshot
2017-02-28 kiramtJAL-2426 Checks on conservation thread in case we are... commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Make startRes,startSeq,endRes,endSeq private... commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Minor refactoring commit | commitdiff | tree | snapshot
2017-02-27 kiramtJAL-2388 Unit tests take 2 commit | commitdiff | tree | snapshot
2017-02-23 kiramtJAL-2388 Unit tests for columns, take 1 commit | commitdiff | tree | snapshot
2017-02-23 kiramtJAL-2388 Unit tests in progress commit | commitdiff | tree | snapshot
2017-02-21 kiramtMerge branch 'bug/JAL-2421overviewboxflicker' into commit | commitdiff | tree | snapshot
2017-02-21 kiramtMerge branch 'develop' into features/JAL-2388OverviewWindow commit | commitdiff | tree | snapshot
2017-02-21 kiramtJAL-2421 Unit test commit | commitdiff | tree | snapshot
2017-02-20 Jim ProcterMerge branch 'features/JAL-2379pcaMemory' into develop commit | commitdiff | tree | snapshot
2017-02-17 kiramtJAL-2388 Incomplete unit tests commit | commitdiff | tree | snapshot
2017-02-17 kiramtJAL-2421 incomplete unit test commit | commitdiff | tree | snapshot
2017-02-17 kiramtJAL-2421 Fix to alignment panel scroll values, and... commit | commitdiff | tree | snapshot
2017-02-16 Jim ProcterMerge branch 'bug/JAL-2374_JAL-2419_overlappinggroups_c... commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 JAL-2419 - TODO suspiciously redundant nested... bug/JAL-2374_JAL-2419_overlappinggroups_currentselection_popupmenu commit | commitdiff | tree | snapshot
2017-02-15 Jim Procterfix for JAL-2419 - don’t trash the current selection commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 don’t search twice for containing group to... commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 tests for SequenceGroup.contains commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 JAL-1270 assign SequenceGroup tests to ‘Functi... commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 new contains methods for seq and seq,apos commit | commitdiff | tree | snapshot
2017-02-15 Jim ProcterJAL-2374 javadoc - qualify that sequence argument to... commit | commitdiff | tree | snapshot
2017-02-14 kiramtJAL-2388 Removed unnecessary CommandListener interface... commit | commitdiff | tree | snapshot
2017-02-10 gmungocJAL-2371 small move of code, typo correction commit | commitdiff | tree | snapshot
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