JAL-2442 applet feature transparency also on overview or structure

diff --git a/src/jalview/appletgui/FeatureSettings.java b/src/jalview/appletgui/FeatureSettings.java
index 2c454a4..1b9fbf9 100755 (executable)
--- a/src/jalview/appletgui/FeatureSettings.java
+++ b/src/jalview/appletgui/FeatureSettings.java
@@ -696,8 +696,7 @@ public class FeatureSettings extends Panel implements ItemListener,
   public void adjustmentValueChanged(AdjustmentEvent evt)
   {
     fr.setTransparency((100 - transparency.getValue()) / 100f);
-    ap.seqPanel.seqCanvas.repaint();
-
+    ap.paintAlignment(true);
   }
 
   class MyCheckbox extends Checkbox