jalview.git
2008-08-20 jprocterUse 0f rather than NaN to specify non-valued annotation...
2008-08-20 jproctertooltip displays formatted annotation row description...
2008-08-19 jprocterbeginning of fix for embl/cds/highlighting IO in https...
2008-08-19 jprocterfix for arrayoutofbounds bug when secondary structure...
2008-08-19 jprocterbetter check for molecule type when identifying interna...
2008-08-19 jprocterregex links for launching URL from single click on...
2008-08-15 jprocterupdate text and version checker
2008-08-15 jprocterdialog size on macs
2008-08-15 jproctercheck for crossreferences every time the menus are...
2008-08-15 jproctercatch invalid URL link exception properly
2008-08-15 jprocterincrease height of dialog
2008-08-15 jprocterallow '|' in regex for URL links to be recovered from...
2008-08-15 jproctersafer copy constructor
2008-08-15 jprocterxrefs retrieved from Uniprot
2008-08-15 jprocteradded castor back onto classpath
2008-08-13 jproctercheck for null viewport on dataset recovery
2008-08-13 jprocterensure input data can be recovered for tree and PCA...
2008-08-13 jprocterdo not try to cancel jobs that cannot be cancelled
2008-08-12 jprocterascii comment
2008-08-12 jproctermac logo resourcelocation hack
2008-08-12 jprocterfix artefacts (again)
2008-08-12 jproctercorrected target name in documentation
2008-08-12 jprocterURL help update
2008-08-12 jprocteradded nojmol parameter to disable check for jmol
2008-08-12 jproctersimpler regex-replace for path
2008-08-12 jprocterfixing paths
2008-08-12 jprocterregex blah
2008-08-12 jproctertrailing slash regexed out
2008-08-12 jprocterpath fixing
2008-08-12 jprocterresources are relative to root of jalview install path
2008-08-12 jprocterupdate to InstallAnywhere 2008 VP1
2008-08-11 jprocterregular expression based URL link generation
2008-08-11 jprocterEnsure 'None' translates into no colour scheme applied
2008-08-11 jprocterUpgraded to IA Standard 2008 VP1
2008-08-11 jprocterUpgraded to InstallAnywhere 2008 Standard ValuePack 1
2008-08-10 jproctermigration to automated build test
2008-08-09 jprocterfix default build path
2008-08-09 jprocterexclude any InstallAnywhere build artefacts
2008-08-09 jprocterinstallanywhere to a destination location
2008-08-07 jprocterupdating installAnywhere autobuild
2008-08-07 jprocterheadless build of InstallAnywhere installer
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence...
2008-08-06 jprocterextra checks for datasetsequence for when getDbRefs...
2008-08-06 jproctergetDBRefs now always returns DBRefArray if it exists...
2008-08-05 jproctervamsas documentation
2008-08-05 jprocternew vamsas session does not open a dialog box
2008-08-05 jprocterweb services and sequence fetcher added to contents
2008-08-05 jprocteradded sequence fetcher and sequence features retrieval...
2008-08-05 jprocterupdated statement of limitations for interactive annota...
2008-08-05 jprocternew sequence fetcher documentation
2008-08-05 jprocterensure das sequence sources are refreshed when das...
2008-08-05 jproctershowbutton default is true
2008-08-04 jprocterstackoverflow fix
2008-08-04 jprocterPFAM retrieval and new applet parameter
2008-08-04 jprocterpfam seed and full alignment retrieval and nicer orderi...
2008-08-04 jprocteradded 'showbutton' applet parameter
2008-08-01 jprocterupdate to feature list (more to come here for 2.4 release)
2008-08-01 jprocternew SequenceFetcher gui and visual delay indication...
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and...
2008-08-01 jproctertodo
2008-08-01 jprocterinterface for windows that display progress bars
2008-07-31 jprocteruse canonical DbSource name in GUI box, and ensure...
2008-07-31 jprocterrefactored method for registering instance of a dbSourc...
2008-07-31 jprocterquick fix for the new uniprot name schema - description...
2008-07-31 jprocteradded specific retrieval arguments to SequneceFetcher...
2008-07-18 jprocterresolve 1:many mappings for sequence associated annotat...
2008-07-18 jprocterresolve 1:many mappings from feature sequence ID to...
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-07-18 jproctercomment
2008-07-18 jprocterannotation file format updated to take idColour and...
2008-07-18 jprocterSequence label colour stored for each sequence group
2008-07-18 jprocterUser defined colourschemes are automatically generated...
2008-07-18 jprocterprevent exception when no default timeout is specified
2008-07-11 jprocterensure annotationElements in non-graphical annotation...
2008-06-30 jprocterjavadoc and constraint to ensure annotation labels...
2008-06-30 jprocterjava 1.1 compatibility
2008-06-30 jproctertiming of 'on load' output before any gui thread operations
2008-06-30 jproctersafer retrieval of groovy scripts from URLs
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio...
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded...
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar...
2008-05-26 jprocterUniprot is not actually a multi-acc capable source...
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property...
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are...
2008-05-12 jprocterfixed Jalview project archive bug where alignment view...
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised...
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc...
2008-04-29 jproctercomments and version wget ping timeout fix for when...
2008-04-29 jprocteradded SeqSearch service interface. Documented and refac...
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the...
2008-04-25 jprocterpotential fix for hang on opening of application window...
2008-04-22 jproctertypo on Jalview help url
2008-04-21 jprocterdocumented and refactored to facilitate headless featur...
2008-04-21 jprocteradded centre column labels menu entry to format menu
2008-04-21 jprocteradded centre annotation labels menu entry (and commente...
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added...
2008-04-21 jproctercastor debug option cleared
2008-04-17 jprocterbugfix for refactoring (webservice windows wouldn't...
2008-04-17 jprocterjavadoc and refactor of setWebService method to allow...
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