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jalview.git
2018-11-07 hansonrJAL-3026-JAL-3063 session test files commit | commitdiff | tree | snapshot
2018-11-07 hansonrJAL-3026-JAL-3063-JAXB marshalling commit | commitdiff | tree | snapshot
2018-11-06 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of commit | commitdiff | tree | snapshot
2018-11-06 hansonrJAXB marshalling by JavaScript successfully unmarshalle... commit | commitdiff | tree | snapshot
2018-11-02 hansonrMarshalling produces valid ZIP file. Unmarshalling... commit | commitdiff | tree | snapshot
2018-11-02 hansonrJAXB update site + transpiler commit | commitdiff | tree | snapshot
2018-11-01 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2018-11-01 hansonrSwingJS-site and net.sf.j2s.core.jar commit | commitdiff | tree | snapshot
2018-11-01 gmungocMerge branch 'feature/JAL-3143ensemblJSON' into commit | commitdiff | tree | snapshot
2018-11-01 gmungocJAXB default namespace from ObjectFactory commit | commitdiff | tree | snapshot
2018-11-01 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of commit | commitdiff | tree | snapshot
2018-11-01 gmungocMerge branch 'feature/JAL-3144noJTree' into commit | commitdiff | tree | snapshot
2018-11-01 hansonrJAXB upgrade for package-info.java namespace commit | commitdiff | tree | snapshot
2018-11-01 gmungocMerge branch 'Jalview-BH/JAL-3026' into commit | commitdiff | tree | snapshot
2018-11-01 gmungocJAL-3048 JAL-3056 reinstate save/load project, colour... Jalview-BH/JAL-3026 commit | commitdiff | tree | snapshot
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' into... feature/JAL-3144noJTree commit | commitdiff | tree | snapshot
2018-10-31 gmungocMerge branch 'Jalview-BH/JAL-3026' into feature/JAL... commit | commitdiff | tree | snapshot
2018-10-31 gmungocJAL-3026 skip unsupported HttpURLConnection methods... commit | commitdiff | tree | snapshot
2018-10-31 Jim ProcterJAL-3063-JAL-3026 propagate classpath changes to classp... commit | commitdiff | tree | snapshot
2018-10-31 hansonrJAXB upgrade; URLConnection.getResourceCode() commit | commitdiff | tree | snapshot
2018-10-31 hansonrJAXB upgrade; URLConnection.getResourceCode() commit | commitdiff | tree | snapshot
2018-10-30 gmungocJAL-3144 left aligned looks better (and works in Jalvie... commit | commitdiff | tree | snapshot
2018-10-30 gmungocJAL-3144 query URL corrected commit | commitdiff | tree | snapshot
2018-10-30 gmungocJAL-3144 close SequenceFetcher before opening PDB/Unipr... commit | commitdiff | tree | snapshot
2018-10-30 hansonrJAL-3026-JAL-3063 adds binary ext to J2S commit | commitdiff | tree | snapshot
2018-10-30 gmungocJAL-3144 spelling, Javadoc, abstract method for JalviewJS commit | commitdiff | tree | snapshot
2018-10-30 hansonrMerge branch 'Jalview-BH/JAL-3026-JAL-3063-JAXB' of... commit | commitdiff | tree | snapshot
2018-10-30 hansonrJAL-3026-JAL-3063-JAXB swingjs/ upgrade commit | commitdiff | tree | snapshot
2018-10-30 gmungocMerge branch 'Jalview-BH/JAL-3026' into feature/JAL... commit | commitdiff | tree | snapshot
2018-10-29 gmungocJAL-3144 SequenceFetcher without JDatabaseTree commit | commitdiff | tree | snapshot
2018-10-29 gmungocJAL-3038 add ActionListener and FocusListener to SwingJ... commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 unit tests updated for code changes! commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 comma-delimited feature attributes for alleles, commit | commitdiff | tree | snapshot
2018-10-25 gmungocJAL-3143 fetch Ensembl(Genomes) features as JSON not GFF commit | commitdiff | tree | snapshot
2018-10-23 Jim ProcterJAL-3026 JAL-3063 patch jalview.project.Jalview2XmlTest... commit | commitdiff | tree | snapshot
2018-10-17 hansonrnonfunctional testing directory - just so I can see... commit | commitdiff | tree | snapshot
2018-10-17 Jim ProcterJAL-3047 - create the clover output dir in the working... commit | commitdiff | tree | snapshot
2018-10-17 Jim ProcterMerge branch 'feature/JAL-3063JAXB' into Jalview-BH... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 service param files read/saved using JAXB... commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 top level element added to JalviewWsParamSet.xsd commit | commitdiff | tree | snapshot
2018-09-28 gmungocJAL-3063 comments re use of xjc to generate Java bindin... commit | commitdiff | tree | snapshot
2018-09-24 gmungocJAL-3063 tidy commented out code commit | commitdiff | tree | snapshot
2018-09-21 gmungocJAL-3063 wrappers with check for null getting optional... commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 tweaks to help text for filters commit | commitdiff | tree | snapshot
2018-09-20 gmungocJAL-2843 help text for colour by attribute, feature... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'bug/JAL-3120restoreFeatureColour' into... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3120 preserve plain colour value when changing... commit | commitdiff | tree | snapshot
2018-09-19 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterMerge branch 'cherrypick/JAL-2808_notabs' into develop commit | commitdiff | tree | snapshot
2018-09-19 Jim ProcterJAL-2808 JAL-3026 deleted all commented out tab code... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-2808 JAL-3032 drop tabbed layout for Colours and... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 use JAXB for 'Save as Project' and load projec... commit | commitdiff | tree | snapshot
2018-09-19 gmungocJAL-3063 unit test for save/load project switched to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user defined colours using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 Save/Load user colour scheme using JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 top level element added to colours schema... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 New View via JAXB commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 temporary extra menu option to save/load proje... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 first version of Jalview2XML using JAXB to... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 JAXB binding classes generated by xjc from... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB tool xjc recognises XML... commit | commitdiff | tree | snapshot
2018-09-18 gmungocJAL-3063 tweak schema so JAXB generates enums for enume... commit | commitdiff | tree | snapshot
2018-09-18 Jim ProcterJAL-2865 release notes commit | commitdiff | tree | snapshot
2018-09-18 hansonrJmol/SwingJS update. Includes new transpiler and runtime commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 test method renamed to match code commit | commitdiff | tree | snapshot
2018-09-17 gmungocJAL-3116 unit tests adapted to EMBL over JAXB commit | commitdiff | tree | snapshot
2018-09-14 gmungocJAL-3116 parse EMBL XML with JAXB (todo: update unit... commit | commitdiff | tree | snapshot
2018-09-13 gmungocJAL-3116 Uniprot XML unmarshalled using JAXB not Castor commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-12 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2018-09-12 gmungocJAL-1551 reinstated Save actions commit | commitdiff | tree | snapshot
2018-09-11 gmungocJAL-3113 override minimum frame size in a way that... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 increased TEST_TIMEOUT to 9000ms - needed... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3112 Use classgraph to reconstruct the classpath... commit | commitdiff | tree | snapshot
2018-09-11 gmungocJAL-3048 recoded edit View Name dialog for JalviewJS commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterJAL-3111 drop hts-1.33 as a dependency (in favour of... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'merge/JAL-3091_JAL-3111_develop_211'... commit | commitdiff | tree | snapshot
2018-09-11 gmungocJAL-3056 offer New / Expand / Gather View in JalviewJS commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'releases/Release_2_11_Branch' into merge... commit | commitdiff | tree | snapshot
2018-09-11 Jim ProcterMerge branch 'develop' into releases/Release_2_11_Branch commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3091 changed release date to 10th September - tweak... releases/Release_2_10_5_Branch Release_2_10_5 commit | commitdiff | tree | snapshot
2018-09-09 Jim ProcterJAL-3106 normalise extension before checking if it... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3107 update any group associated annotation rows... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 JAL-2968 renamed patched VAqua5 to VAqua5... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 if selected file is null (On Java 10/OSX ... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-2988 workaround: overload getSelectedFile() because... commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3106 use .jvp as default commit | commitdiff | tree | snapshot
2018-09-07 Jim ProcterJAL-3105 fix for focus transfer after window closed... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 code committed in error (failed patch for... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3091 release notes for JAL-3104 commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-3105 reallocate quality and consensus annotation... commit | commitdiff | tree | snapshot
2018-09-06 Jim ProcterJAL-2854 compute visible annotation panel height and... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3065 don’t quote class path args for Runtime.exec... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 update whats new! commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 update Java 10 known issues/workarounds in... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 known defect in whats new for Java 10 issues... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 add Ben Soares to authors list and switch... commit | commitdiff | tree | snapshot
2018-09-05 Jim ProcterJAL-3091 release notes for updated memory settings commit | commitdiff | tree | snapshot
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