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jalview.git
2017-05-25 kiramtMerge branch 'bug/JAL-2551' into bug/JAL-2034contextchange commit | commitdiff | tree | snapshot
2017-05-24 kiramtJAL-2551 Fix to group colouring when group extent is... bug/JAL-2551 commit | commitdiff | tree | snapshot
2017-05-24 kiramtJAL-2034 Added isDefined flag to SequenceGroup commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2504 update the right feature colour when creating... bug/JAL-2510amendFeatures commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2544 unit tests for sort by feature score commit | commitdiff | tree | snapshot
2017-05-22 gmungocJAL-2544 check feature overlaps selection region commit | commitdiff | tree | snapshot
2017-05-22 kiramtMerge remote-tracking branch 'origin/bug/JAL-2256'... commit | commitdiff | tree | snapshot
2017-05-22 Jim ProcterJAL-2418 patch build - broken htsjdk import commit | commitdiff | tree | snapshot
2017-05-19 gmungocJAL-2526 removed redundant call to Sequence.findPosition() commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterMerge branch 'bug/JAL-2388_typeCheckAlignView.getUpdate... commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterJAL-2388 return empty hidden columns for fully visible... commit | commitdiff | tree | snapshot
2017-05-18 kiramtJAL-2256 Corrected AllCols/Rows iterator behaviour... bug/JAL-2256 commit | commitdiff | tree | snapshot
2017-05-18 Jim ProcterJAL-2418 remove explicit test suite stats commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'bug/JAL-2510amendFeatures' into develop commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 add links to issues.jalview.org for experiment... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 experimental section in ‘Whats New’ commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2447 JAL-2295 JAL-2296 documenting as experimental... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'develop' into documentation/JAL-2418_rele... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterMerge branch 'features/JAL-2447experimentalFlag' into... commit | commitdiff | tree | snapshot
2017-05-17 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-17 gmungocJAL-2504 use (and update) defaults for new feature... commit | commitdiff | tree | snapshot
2017-05-17 gmungocMerge branch 'develop' into bug/JAL-2510amendFeatures commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'documentation/JAL-2418_release2102' into... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-384 documentation on custom colours groovy examples commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-384 - groovy scripts for conserved/unconserved... commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release notes commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 JAL-2316 added to new features commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2316 tweaking docs and links in help commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterJAL-2418 release 2.10.2 release notes template commit | commitdiff | tree | snapshot
2017-05-16 Jim Procteralternative patch for JAL-2339 readability in java... commit | commitdiff | tree | snapshot
2017-05-16 gmungocJAL-2403 simplify instantiation / configuration of... commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2522 Missed fix to applet commit | commitdiff | tree | snapshot
2017-05-16 kiramtJAL-2388 Rationalised hashCode method in HiddenColumns commit | commitdiff | tree | snapshot
2017-05-16 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 fix test: knockon from capitalisation on secon... bug/JAL-2507_rnasecstrstockholm commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2311 disable and relocate Jared service tests to... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 capitalisation for annotation lines generated... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 case insensitive recognition of annotation... commit | commitdiff | tree | snapshot
2017-05-15 gmungocJAL-2532 new feature types and colour changes from... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2507 - required callers to specify exact ignore... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2535 quick hack to implement posterior probabilitie... commit | commitdiff | tree | snapshot
2017-05-15 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-15 kiramtJAL-2388 Add missed optimisation commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterMerge branch 'features/JAL-2376_add-horizontal-bar... commit | commitdiff | tree | snapshot
2017-05-15 Jim ProcterJAL-2371 create a default ResidueShader when constructi... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2435splitScreenFont' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2418 broken help ref commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 documentation and what’s new commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mention new checkbox in linked cDNA/Protein... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2435 mirror antiAlias setting between cDNA and... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2388OverviewWindow' into... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 mention overview popup in documentation commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2388 checkbox in overview popup for applet commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterMerge branch 'features/JAL-2228_efficient_featurecounts... commit | commitdiff | tree | snapshot
2017-05-12 Jim ProcterJAL-2228 updated script in help docs, renamed docs... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholm' into... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2509 JAL-2507 allow whitespace in GS annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 JAL-2509 allow whitespace==null for annotation... commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 test if an annotation is ‘whitespace’ commit | commitdiff | tree | snapshot
2017-05-11 Jim ProcterJAL-2507 Annotation.EMPTY_ANNOTATION - non-null whitesp... commit | commitdiff | tree | snapshot
2017-05-10 kiramtMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-10 kiramtJAL-2522 Fix to cursor scrolling commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 spit out tests for ‘{‘ WUSS io from ‘[‘ WUSS... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2509 verify stockholm parser’s bracket regex is... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2509 extend set of brackets recognised by stockholm... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 JAL-2509 extend test to cover round trip of... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 unpaired RNA marked as ‘ ‘ in Stockholm SS... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 output secondary structure regardless of prese... commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 simplify round trip test via AppletFormatAdapter commit | commitdiff | tree | snapshot
2017-05-09 Jim ProcterJAL-2507 test for alignment+rna annotation -> Stockholm... commit | commitdiff | tree | snapshot
2017-05-09 gmungocJAL-1632 correct i18n and NPE commit | commitdiff | tree | snapshot
2017-05-09 kiramtJAL-2388 Added checkbox to toggle hidden columns menu... commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1933 Spanish tooltips for annotation commit | commitdiff | tree | snapshot
2017-05-08 gmungocJAL-1632 i18n for warning messages commit | commitdiff | tree | snapshot
2017-05-08 gmungocMerge remote-tracking branch 'origin/bug/JAL-2515'... commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2515 Id panel in applet updated for NPE on urlProvider bug/JAL-2515 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And corresponding test bug/JAL-2512 commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 And applet commit | commitdiff | tree | snapshot
2017-05-08 kiramtJAL-2512 Fix to show non-gap positions in None colour... commit | commitdiff | tree | snapshot
2017-05-05 gmungocMerge branch 'develop' into features/JAL-2435splitScree... commit | commitdiff | tree | snapshot
2017-05-05 gmungocJAL-964 JAL-2510 update Feature Settings from Amend... commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into features/JAL-2388hiddencolumnschanges commit | commitdiff | tree | snapshot
2017-05-05 kiramtMerge remote-tracking branch 'origin/develop' into commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2506 allow graduated colour as default in new Seque... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2510 ensure modified feature type is displayed commit | commitdiff | tree | snapshot
2017-05-04 gmungocMerge branch 'develop' of https://source.jalview.org... commit | commitdiff | tree | snapshot
2017-05-04 gmungocJAL-2504 allow feature type to be specified for Create... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'develop' into features/JAL-2228_efficient... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'bug/JAL-2507_rnasecstrstockholmoutput... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2503_filteronquantitativeann... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterMerge branch 'features/JAL-2393customMatrices' into... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-1656 make RNAML->Stockholm round trip test pass... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 allow differences in visibility of... commit | commitdiff | tree | snapshot
2017-05-04 Jim ProcterJAL-2507 JAL-2509 new assert to compare secondary struc... commit | commitdiff | tree | snapshot
2017-05-04 Jim Procterfix for JAL-2509 - don’t replace all bracket types... commit | commitdiff | tree | snapshot
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