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jalview.git
2018-05-21
gmungoc
JAL-2920 use HGVS notation for protein variant feature
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2018-05-11
gmungoc
JAL-2986 corrected findIndex for out of range residue...
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2018-05-11
gmungoc
JAL-2986 additional asserts for SequenceCursor updates
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2018-05-11
gmungoc
JAL-2986 failing test added
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2018-05-10
Jim Procter
JAL-2920 release notes
Release_2_10_4
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2018-05-10
Jim Procter
Merge branch 'bug/JAL-2920_uniprotvariantfeature' into...
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2018-05-10
Jim Procter
JAL-2920 basic test for Description from features with...
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2018-05-10
Jim Procter
JAL-2920 simplified logic and added corner cases for...
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2018-05-09
Jim Procter
JAL-2906 update release date and release notes
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2018-05-09
Jim Procter
JAL-2931 patch IA paths for new build box
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2018-05-09
gmungoc
JAL-2984 add pdb as sequence(s) if associate structure...
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2018-05-09
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
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2018-05-09
Jim Procter
JAL-2976 fixed bad equivalence check and implemented...
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2018-05-08
Jim Procter
JAL-2321 release notes
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2018-05-08
Jim Procter
Merge branch 'patch/JAL-2321_addsecstrForDroppedPDBFile...
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2018-05-07
Jim Procter
JAL-2321 patch test to ensure structures are actually...
patch/JAL-2321_addsecstrForDroppedPDBFile
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2018-05-07
Jim Procter
JAL-2321 ensure default is ‘parseImmediately=true’
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2018-05-07
Jim Procter
JAL-2321 use configured values for structure derived...
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2018-05-07
Jim Procter
JAL-2321 add secondary structure & temp factor if not...
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2018-05-07
Jim Procter
JAL-2321 use StructureImportSettings singleton settings...
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2018-05-07
Jim Procter
JAL-2321 isParseImmediately() allows the parse() method...
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2018-05-07
Jim Procter
JAL-2321 allow JmolParser to be configured before parsi...
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2018-05-07
gmungoc
JAL-2808 ensure test setUp/tearDown alwaysRun
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2018-05-07
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-05-07
gmungoc
JAL-1767 unit test for save and restore PCA
features/JAL-1767pcaInProject
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2018-05-07
gmungoc
JAL-1767 scheme DoubleMatrix type includes D and E...
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2018-05-07
Jim Procter
JAL-2906 apply GPLv3 license source
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2018-05-07
gmungoc
JAL-2982 use configured background colour in PCA image...
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2018-05-07
gmungoc
JAL-1767 JAL-2647 hide 'Input Data..' for PCA loaded...
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2018-05-07
gmungoc
JAL-1767 save PCA D and E vectors instead of 'details...
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2018-05-07
Jim Procter
JAL-2960 don’t override a swing method and create infin...
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2018-05-07
Jim Procter
Merge branch 'releases/Release_2_10_4_Branch' of source...
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2018-05-04
gmungoc
JAL-2906 small tweaks to release notes
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2018-05-04
gmungoc
JAL-2975 Shift-arrow keys to rotate PCA incrementally
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2018-05-04
gmungoc
JAL-1767 schema and Castor changes for Save PCA in...
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2018-05-04
gmungoc
JAL-2965 graduate brightness on z-axis from centre...
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2018-05-04
gmungoc
JAL-1767 refactorings to enable faithful restore of...
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2018-05-04
Jim Procter
JAL-2906 2.10.4 release for 8th May 2018
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2018-05-04
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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2018-05-04
Jim Procter
JAL-2906 removed mention of experimental features,...
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2018-05-04
Jim Procter
JAL-2976 patch NPE when trying to open Uniprot FTS
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2018-05-04
Jim Procter
JAL-2929 JAL-2922 release notes
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2018-05-04
Jim Procter
JAL-2976 typo in installAnywhere build for VAqua dependency
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2018-05-04
Jim Procter
JAL-2960 release notes
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2018-05-04
Jim Procter
JAL-2948 transfer features/annotation is now available...
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2018-05-04
Jim Procter
JAL-2960 raise the structure view after adding structur...
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2018-05-04
Jim Procter
JAL-2976 Vaqua fallback release notes JAL-2906
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2018-05-04
Jim Procter
Merge branch 'patch/JAL-2976_vaqua4_fallback' into...
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2018-05-02
gmungoc
JAL-1767 getters/setters for D and E vectors
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2018-05-02
Jim Procter
JAL-2976 fallback to Vaqua for Macs that don’t work...
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2018-05-02
Jim Procter
JAL-2976 Vaqua(4) as a dependency
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2018-05-01
Jim Procter
JAL-2899 release notes
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2018-05-01
Jim Procter
JAL-2973 JAL-2974 known defects for 2.10.4 (JAL-2906)
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2018-05-01
Jim Procter
JAL-2925 release notes
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2018-05-01
gmungoc
JAL-1767 include d and e vectors in Matrix.copy()
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2018-05-01
Jim Procter
JAL-2593 JAL-2945 JAL-2952 JAL-2954 release notes for...
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2018-05-01
Jim Procter
JAL-2223 JAL-2781 JAL-2780 JAL-2946 JAL-2906 release...
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2018-05-01
Jim Procter
JAL-2906 reformat release notes
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2018-05-01
Jim Procter
JAL-2906 typo
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2018-05-01
Jim Procter
JAL-2944 revised docs and structure chooser screen...
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2018-05-01
Jim Procter
JAL-2899 colouring moved from SwingWorker to a backgrou...
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2018-04-30
Jim Procter
Merge branch 'bug/JAL-2899' into releases/Release_2_10_...
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2018-04-30
Jim Procter
JAL-2906 release 2.10.4 on 1st May 2018
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2018-04-30
gmungoc
JAL-2965 graduated sequence point colour from back...
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2018-04-27
gmungoc
JAL-2964 tree@linkToAllViews attribute added to project...
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2018-04-27
gmungoc
JAL-2963 correctly dim PCA points with negative z-coord...
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2018-04-27
gmungoc
JAL-1767 refactoring and tidying of RotatableCanvas...
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2018-04-26
gmungoc
JAL-2962 start on help updates
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2018-04-26
gmungoc
JAL-2962 rename run method (as not a Runnable)
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2018-04-26
gmungoc
JAL-2962 remove Change Parameters menu from PCA panel
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2018-04-26
gmungoc
JAL-2962 option to offer BLOSUM62 for nucleotide PCA
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2018-04-26
gmungoc
JAL-2962 code tidying/documentation (non-functional...
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2018-04-25
Jim Procter
Merge branch 'features/JAL-2944_openStructuresInSelecte...
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2018-04-25
gmungoc
JAL-1767 minor field tidying prior to functional changes
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2018-04-24
gmungoc
JAL-2959 no Print dialog shown if Page Format is Cancelled
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2018-04-23
gmungoc
JAL-2954 more efficient SearchResults.markColumns
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2018-04-23
gmungoc
JAL-2952 set negative TempFactor values as AlignmentAnn...
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2018-04-18
gmungoc
Merge branch 'releases/Release_2_10_4_Branch' into...
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2018-04-18
gmungoc
JAL-2593 render 'duplicate' features if transparency...
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2018-04-13
gmungoc
Merge branch 'features/JAL-2944_openStructuresInSelecte...
features/JAL-2944_openStructuresInSelectedView
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2018-04-12
gmungoc
JAL-2223 don't add duplicate mappings to StructureSelec...
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2018-04-12
gmungoc
JAL-1847 minor post-review updates
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2018-04-12
gmungoc
JAL-2944 tidies for review comments
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2018-04-11
Jim Procter
JAL-2946 catch unexpected SIFTS mapping exceptions...
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2018-04-09
Jim Procter
JAL-2944 ’new view’ and ‘add to view’ button rather...
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2018-04-09
Jim Procter
JAL-1847 superpose checkbox in structure chooser
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2018-04-09
Jim Procter
JAL-1847 JAL-2944 make superposition step a configurabl...
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2018-04-06
Jim Procter
failing test for JAL-2223
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2018-04-05
Jim Procter
JAL-2945 resolve model as PDB file. Need to verify...
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2018-04-05
Jim Procter
JAL-2945 failing test for structure mapping
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2018-04-05
Jim Procter
JAL-2945 formatting
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2018-04-05
Jim Procter
JAL-2945 provide access to last highlighted results
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2018-04-05
Jim Procter
JAL-2944 open selected structures in existing or a...
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2018-04-05
Jim Procter
JAL-2944 combo box to pick which viewer to load structu...
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2018-04-05
Jim Procter
JAL-2944 methods to check existence and get a title...
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2018-04-05
Jim Procter
JAL-2944 allow StructureViewer proxy to be created...
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2018-04-05
Jim Procter
JAL-2944 get viewer’s title via toString()
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2018-04-05
Jim Procter
JAL-2944 expose UI update methods in api
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2018-04-05
Jim Procter
JAL-2944 remove modal prompt logic and expose methods...
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2018-04-05
Jim Procter
JAL-2944 pull up structure viewer discovery routine...
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