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jalview.git
2008-08-07 jprocterupdating installAnywhere autobuild commit | commitdiff | tree | snapshot
2008-08-07 jprocterheadless build of InstallAnywhere installer commit | commitdiff | tree | snapshot
2008-08-06 jproctergeneration of additional URLs for DBRefs on a sequence... commit | commitdiff | tree | snapshot
2008-08-06 jprocterextra checks for datasetsequence for when getDbRefs... commit | commitdiff | tree | snapshot
2008-08-06 jproctergetDBRefs now always returns DBRefArray if it exists... commit | commitdiff | tree | snapshot
2008-08-05 jproctervamsas documentation commit | commitdiff | tree | snapshot
2008-08-05 jprocternew vamsas session does not open a dialog box commit | commitdiff | tree | snapshot
2008-08-05 jprocterweb services and sequence fetcher added to contents commit | commitdiff | tree | snapshot
2008-08-05 jprocteradded sequence fetcher and sequence features retrieval... commit | commitdiff | tree | snapshot
2008-08-05 jprocterupdated statement of limitations for interactive annota... commit | commitdiff | tree | snapshot
2008-08-05 jprocternew sequence fetcher documentation commit | commitdiff | tree | snapshot
2008-08-05 jprocterensure das sequence sources are refreshed when das... commit | commitdiff | tree | snapshot
2008-08-05 jproctershowbutton default is true commit | commitdiff | tree | snapshot
2008-08-04 jprocterstackoverflow fix commit | commitdiff | tree | snapshot
2008-08-04 jprocterPFAM retrieval and new applet parameter commit | commitdiff | tree | snapshot
2008-08-04 jprocterpfam seed and full alignment retrieval and nicer orderi... commit | commitdiff | tree | snapshot
2008-08-04 jprocteradded 'showbutton' applet parameter commit | commitdiff | tree | snapshot
2008-08-01 jprocterupdate to feature list (more to come here for 2.4 release) commit | commitdiff | tree | snapshot
2008-08-01 jprocternew SequenceFetcher gui and visual delay indication... commit | commitdiff | tree | snapshot
2008-08-01 jprocterupdated jalview version of dasobert 1.53e client and... commit | commitdiff | tree | snapshot
2008-08-01 jproctertodo commit | commitdiff | tree | snapshot
2008-08-01 jprocterinterface for windows that display progress bars commit | commitdiff | tree | snapshot
2008-07-31 jprocteruse canonical DbSource name in GUI box, and ensure... commit | commitdiff | tree | snapshot
2008-07-31 jprocterrefactored method for registering instance of a dbSourc... commit | commitdiff | tree | snapshot
2008-07-31 jprocterquick fix for the new uniprot name schema - description... commit | commitdiff | tree | snapshot
2008-07-31 jprocteradded specific retrieval arguments to SequneceFetcher... commit | commitdiff | tree | snapshot
2008-07-18 jprocterresolve 1:many mappings for sequence associated annotat... commit | commitdiff | tree | snapshot
2008-07-18 jprocterresolve 1:many mappings from feature sequence ID to... commit | commitdiff | tree | snapshot
2008-07-18 jprocterallow findSeq to begin *after* a given sequence in... commit | commitdiff | tree | snapshot
2008-07-18 jprocterSequence label colour stored for each sequence group commit | commitdiff | tree | snapshot
2008-07-18 jproctercomment commit | commitdiff | tree | snapshot
2008-07-18 jprocterannotation file format updated to take idColour and... commit | commitdiff | tree | snapshot
2008-07-18 jprocterSequence label colour stored for each sequence group commit | commitdiff | tree | snapshot
2008-07-18 jprocterUser defined colourschemes are automatically generated... commit | commitdiff | tree | snapshot
2008-07-18 jprocterprevent exception when no default timeout is specified commit | commitdiff | tree | snapshot
2008-07-11 jprocterensure annotationElements in non-graphical annotation... commit | commitdiff | tree | snapshot
2008-06-30 jprocterjavadoc and constraint to ensure annotation labels... commit | commitdiff | tree | snapshot
2008-06-30 jprocterjava 1.1 compatibility commit | commitdiff | tree | snapshot
2008-06-30 jproctertiming of 'on load' output before any gui thread operations commit | commitdiff | tree | snapshot
2008-06-30 jproctersafer retrieval of groovy scripts from URLs commit | commitdiff | tree | snapshot
2008-06-30 jprocterincluded includeGaps flag in clustalW colour calculatio... commit | commitdiff | tree | snapshot
2008-06-26 jprocteradded URLEncoder.encode to properly escape CGI encoded... commit | commitdiff | tree | snapshot
2008-06-23 jprocterlocal sequence properties are preserved in SeqCigar... commit | commitdiff | tree | snapshot
2008-05-26 jprocterUniprot is not actually a multi-acc capable source... commit | commitdiff | tree | snapshot
2008-05-26 jprocterbugfix so MULTI_ACC capable sources value property... commit | commitdiff | tree | snapshot
2008-05-26 jprocterminor bugfix for case when PDB sequence strings are... commit | commitdiff | tree | snapshot
2008-05-12 jprocterfixed Jalview project archive bug where alignment view... commit | commitdiff | tree | snapshot
2008-05-02 jprocterbugfix to avoid null pointer exceptions being raised... commit | commitdiff | tree | snapshot
2008-05-01 jprocterfix for unicode char labels causing arrayOutOfBoundsExc... commit | commitdiff | tree | snapshot
2008-04-29 jproctercomments and version wget ping timeout fix for when... commit | commitdiff | tree | snapshot
2008-04-29 jprocteradded SeqSearch service interface. Documented and refac... commit | commitdiff | tree | snapshot
2008-04-29 jproctertrial fix for parsing NHX style trees to extract the... commit | commitdiff | tree | snapshot
2008-04-25 jprocterpotential fix for hang on opening of application window... commit | commitdiff | tree | snapshot
2008-04-22 jproctertypo on Jalview help url commit | commitdiff | tree | snapshot
2008-04-21 jprocterdocumented and refactored to facilitate headless featur... commit | commitdiff | tree | snapshot
2008-04-21 jprocteradded centre column labels menu entry to format menu commit | commitdiff | tree | snapshot
2008-04-21 jprocteradded centre annotation labels menu entry (and commente... commit | commitdiff | tree | snapshot
2008-04-21 jproctercentrecolumnlabels format menu item and parameter added... commit | commitdiff | tree | snapshot
2008-04-21 jproctercastor debug option cleared commit | commitdiff | tree | snapshot
2008-04-17 jprocterbugfix for refactoring (webservice windows wouldn't... commit | commitdiff | tree | snapshot
2008-04-17 jprocterjavadoc and refactor of setWebService method to allow... commit | commitdiff | tree | snapshot
2008-04-17 jproctertodo for refactoring webservice GUI creation mechanism commit | commitdiff | tree | snapshot
2008-04-17 jprocterjavadoc for webservice client tutorial commit | commitdiff | tree | snapshot
2008-04-17 jproctertodos commit | commitdiff | tree | snapshot
2008-04-17 jprocterjavadoc and quiet flag commit | commitdiff | tree | snapshot
2008-04-11 jprocterfix JPred thread so job aborts if submission fails. commit | commitdiff | tree | snapshot
2008-04-10 jprocterquick fix for conservation calculation when residue... commit | commitdiff | tree | snapshot
2008-04-10 jprocterbug fix for Features/Annotations file parameter parsing... commit | commitdiff | tree | snapshot
2008-03-08 jprocterfirst hack to get true DNA and Sequence highlighting... commit | commitdiff | tree | snapshot
2008-03-08 jproctercorrection to Jnet service documentation commit | commitdiff | tree | snapshot
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff | tree | snapshot
2008-02-24 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff | tree | snapshot
2008-02-22 jproctersequenceId is a string, not an integer - allows generat... commit | commitdiff | tree | snapshot
2008-02-22 jproctervalid format for writing test commit | commitdiff | tree | snapshot
2008-02-22 jprocterprobably unnecessary optimisation (SequenceGroup.addSeq... commit | commitdiff | tree | snapshot
2008-02-22 jprocterOn 'save' menu entry check to see if fileformat is... commit | commitdiff | tree | snapshot
2008-02-22 jprocterCDS segment index commit | commitdiff | tree | snapshot
2008-02-22 jprocterpossible fix for stockhom ss-annotation re-creation... commit | commitdiff | tree | snapshot
2008-02-22 jprocterindex number for contiguous part of mapped sequence... commit | commitdiff | tree | snapshot
2008-02-22 jprocterjavadoc commit | commitdiff | tree | snapshot
2008-02-22 jproctertypo for AXISLOGLEVEL constant commit | commitdiff | tree | snapshot
2008-02-22 jprocterexplicit quote of chaincode in errror message commit | commitdiff | tree | snapshot
2008-01-29 jprocterminor change to output of main method for testing file IO commit | commitdiff | tree | snapshot
2008-01-29 jproctergroovy from stdin commit | commitdiff | tree | snapshot
2008-01-29 jproctermemory usage information and flag to indicate if warnin... commit | commitdiff | tree | snapshot
2008-01-29 jprocteradd methods to read from current position of existing... commit | commitdiff | tree | snapshot
2008-01-29 jprocterensure mark is set before identification is started. commit | commitdiff | tree | snapshot
2008-01-29 jprocterFileParse object can be re-used to read different files... commit | commitdiff | tree | snapshot
2008-01-29 jprocterflag to indicate if errors are raised as warning dialog... commit | commitdiff | tree | snapshot
2008-01-29 jprocterexplicitly allow access to showMemoryUsage flag in... commit | commitdiff | tree | snapshot
2008-01-29 jprocterjavadoc commit | commitdiff | tree | snapshot
2008-01-29 jproctergroovy scripts can be read from stdin commit | commitdiff | tree | snapshot
2008-01-29 jprocterreinstated proper case insensitive searching for both... commit | commitdiff | tree | snapshot
2008-01-22 jproctertimings and memory usage for reading in a file commit | commitdiff | tree | snapshot
2008-01-22 jproctermore efficient parsing of large files, do not create... commit | commitdiff | tree | snapshot
2008-01-22 jprocterensured that seqeunce feature shift takes into account... commit | commitdiff | tree | snapshot
2008-01-22 jprocternew method to get map of sequence positions correspondi... commit | commitdiff | tree | snapshot
2008-01-21 jprocterfix regex for annotation subtype to use non-whitespace... commit | commitdiff | tree | snapshot
2008-01-21 jprocterjavadoc and main method for testing file input routines commit | commitdiff | tree | snapshot
2008-01-21 jprocterjavadoc commit | commitdiff | tree | snapshot
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